Meup041590.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000005.1:23188053-23191347[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 3.4 4.4e+02 3.6 0.0 5 21 65 80 61 81 0.90
2 38 7e-06 0.00091 21.4 0.5 1 23 88 110 88 110 0.98
3 38 1e-07 1.3e-05 27.2 1.4 1 23 116 138 116 138 0.99
4 38 4.2e-08 5.5e-06 28.4 1.6 1 23 144 166 144 166 0.99
5 38 2.1e-05 0.0028 19.9 0.2 1 23 172 194 172 194 0.99
6 38 4.7e-08 6.2e-06 28.3 2.0 1 23 200 222 200 222 0.99
7 38 1.8e-06 0.00024 23.3 0.4 1 22 228 249 228 249 0.96
8 38 0.0012 0.15 14.4 0.2 5 23 249 267 248 267 0.96
9 38 0.00031 0.04 16.3 4.6 1 23 273 295 273 295 0.99
10 38 1.2e-07 1.5e-05 27.0 3.4 1 23 301 323 301 323 0.99
11 38 1e-05 0.0013 20.9 1.7 1 23 329 351 329 351 0.99
12 38 2.5e-07 3.3e-05 26.0 1.8 1 23 357 379 357 379 0.99
13 38 4.2e-08 5.5e-06 28.4 1.6 1 23 385 407 385 407 0.99
14 38 2.1e-05 0.0028 19.9 0.2 1 23 413 435 413 435 0.99
15 38 1e-07 1.3e-05 27.2 1.4 1 23 441 463 441 463 0.99
16 38 1.4e-06 0.00018 23.7 0.4 1 22 469 490 469 490 0.96
17 38 0.0012 0.15 14.4 0.2 5 23 490 508 489 508 0.96
18 38 0.00031 0.04 16.3 4.6 1 23 514 536 514 536 0.99
19 38 1.2e-07 1.5e-05 27.0 3.4 1 23 542 564 542 564 0.99
20 38 2.1e-05 0.0028 19.9 0.2 1 23 570 592 570 592 0.99
21 38 4.7e-08 6.2e-06 28.3 2.0 1 23 598 620 598 620 0.99
22 38 1.8e-06 0.00024 23.3 0.4 1 22 626 647 626 647 0.96
23 38 0.0012 0.15 14.4 0.2 5 23 647 665 646 665 0.96
24 38 0.00031 0.04 16.3 4.6 1 23 671 693 671 693 0.99
25 38 1.2e-07 1.5e-05 27.0 3.4 1 23 699 721 699 721 0.99
26 38 1e-05 0.0013 20.9 1.7 1 23 727 749 727 749 0.99
27 38 2.5e-07 3.3e-05 26.0 1.8 1 23 755 777 755 777 0.99
28 38 4.2e-08 5.5e-06 28.4 1.6 1 23 783 805 783 805 0.99
29 38 2.1e-05 0.0028 19.9 0.2 1 23 811 833 811 833 0.99
30 38 1e-07 1.3e-05 27.2 1.4 1 23 839 861 839 861 0.99
31 38 1.4e-06 0.00018 23.7 0.4 1 22 867 888 867 888 0.96
32 38 0.0012 0.15 14.4 0.2 5 23 888 906 887 906 0.96
33 38 0.00031 0.04 16.3 4.6 1 23 912 934 912 934 0.99
34 38 1.2e-07 1.5e-05 27.0 3.4 1 23 940 962 940 962 0.99
35 38 1.9e-07 2.5e-05 26.3 2.7 1 23 968 990 968 990 0.99
36 38 4.7e-08 6.2e-06 28.3 2.0 1 23 996 1018 996 1018 0.99
37 38 1.8e-07 2.4e-05 26.4 0.6 1 23 1024 1046 1024 1046 0.99
38 38 6.5e-06 0.00085 21.5 3.5 1 23 1052 1074 1052 1074 0.99

Sequence Information

Coding Sequence
atgctaatatCTATAACTAAAACTGGAGAAAAAAGAAACGCAATTGATATCGAAATTAAAGCAGAAATCGATTGTATTGACTGTTATGATTTTGAAGGAACAGTTTTAGACCAATTCAACTCTTCAGAATTCATTACTCATATGAATTCGAACTTGACATCTAACTGTTCAGAGACAAATTCAGTGACTGAAAACTGTGATAAAAAGTCTACAGAATCTAATTTAACTGTGCATAAAAGAATAAATACCGGAAAAAAGCAGTATATATGTGATATCTGTGATAagggattttctgaaaaatcttatttaattatgcATTTTAGAACTCATACTGGTGGAAAGTCATATAAGTGTGATATATGTGATAAGCCGTTTTCTTCAACATCTCAATTAACAAATCATACAAGGACACATACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCATTTTCTACATCATCAAATTTAACAATGCATACAAGGACACACACCGGTGAAAAGCCGTATAAATGTGATATATGTGATAAGGGGTTTTCTGCAAAAACttctataataattcatataagaACTCATACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGCCGTTTTCTTCAAAATctcatttaataattcatacaaGAACTCACACCGGTGAAAAGCCATTTAAGTGTGATATGTGTGATAAGCCGTTTTCTACTTCATCAAATTTAACAATGCATTCAAGGACATGTGATAAGAAGTTTTCTGTTGCAGCTTCTTTAACAAGGCATACAATGACACATTACGGCAAAAGGACATACAAATGTGATATCTGTGATATGAATTGTTCTTCTTCAACACATTTAACAATTCATTCAAGGACGCATACTGGAGAAAGAccttataaatgtaatatatgtgATAAGCGGTTTTCTAGATCGTATCAATTAACAATGCACACAAGGACACACACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGTGGTTTTCTTCAACATCTCAATTAACAACGCATACAAGGACACACACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCATTTTCTTCAACATCTCAATTAACAAATCATACAAGGACACATACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCATTTTCTACATCATCAAATTTAACAATGCATACAAGGACACACACCGGTGAAAAGCCGTATAAATGTGATATATGTGATAAGGGGTTTTCTGCAAAAACttctataataattcatataagaACTCATACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGCCGTTTTCTTCAACATCTCAATTAACAAATCATACAAGGACACATACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCGTTTTCTACTTCATCAAATTTAACAATGCATTCAAGGACATGTGATAAGAAGTTTTCTGTTGCAGCTTCTTTAACAAGGCATACAATGACACATTACGGCAAAAGGACATACAAATGTGATATCTGTGATATGAATTGTTCTTCTTCAACACATTTAACAATTCATTCAAGGACGCATACTGGAGAAAGAccttataaatgtaatatatgtgATAAGCGGTTTTCTAGATCGTATCAATTAACAATGCACACAAGGACACACACCGGTGAAAAGCCGTATAAATGTGATATATGTGATAAGGGGTTTTCTGCAAAAACttctataataattcatataagaACTCATACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGCCGTTTTCTTCAAAATctcatttaataattcatacaaGAACTCACACCGGTGAAAAGCCATTTAAGTGTGATATGTGTGATAAGCCGTTTTCTACTTCATCAAATTTAACAATGCATTCAAGGACATGTGATAAGAAGTTTTCTGTTGCAGCTTCTTTAACAAGGCATACAATGACACATTACGGCAAAAGGACATACAAATGTGATATCTGTGATATGAATTGTTCTTCTTCAACACATTTAACAATTCATTCAAGGACGCATACTGGAGAAAGAccttataaatgtaatatatgtgATAAGCGGTTTTCTAGATCGTATCAATTAACAATGCACACAAGGACACACACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGTGGTTTTCTTCAACATCTCAATTAACAACGCATACAAGGACACACACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCATTTTCTTCAACATCTCAATTAACAAATCATACAAGGACACATACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCATTTTCTACATCATCAAATTTAACAATGCATACAAGGACACACACCGGTGAAAAGCCGTATAAATGTGATATATGTGATAAGGGGTTTTCTGCAAAAACttctataataattcatataagaACTCATACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGCCGTTTTCTTCAACATCTCAATTAACAAATCATACAAGGACACATACCGGTGTCAAGCCGTATAAATGTGATATGTGTGATAAGCCGTTTTCTACTTCATCAAATTTAACAATGCATTCAAGGACATGTGATAAGAAGTTTTCTGTTGCAGCTTCTTTAACAAGGCATACAATGACACATTACGGCAAAAGGACATACAAATGTGATATCTGTGATATGAATTGTTCTTCTTCAACACATTTAACAATTCATTCAAGGACGCATACTGGAGAAAGAccttataaatgtaatatatgtgATAAGCGGTTTTCTAGATCGTATCAATTAACAATGCACACAAGGACACACACCGGTGAAAAGCCATATAAGTGTGATATATGTGATAAGCGGTTTTCTTCAACATCTCAATTAACAACGCATACAAGGACACACACCGGTGAAAGGCCGTATAAATGTGATATATGTGATAAGCCGTTTTCTTCAAAATctcatttaataattcatacaaGAACTCACACCGGTGAAAAGCCATTTAAGTGTGATATATGTGATAAGGTGTTTTCTGTAAAATCTTCTGTAATAAAGCATATAAGAACTCATACCGGTGTCAAGCCGTATAAATGTGATATCTGTGACAAGGGGTTtactaaaacattttatttaagaaagCACACAAGGACACATACTGGTGTCTAA
Protein Sequence
MLISITKTGEKRNAIDIEIKAEIDCIDCYDFEGTVLDQFNSSEFITHMNSNLTSNCSETNSVTENCDKKSTESNLTVHKRINTGKKQYICDICDKGFSEKSYLIMHFRTHTGGKSYKCDICDKPFSSTSQLTNHTRTHTGVKPYKCDMCDKPFSTSSNLTMHTRTHTGEKPYKCDICDKGFSAKTSIIIHIRTHTGEKPYKCDICDKPFSSKSHLIIHTRTHTGEKPFKCDMCDKPFSTSSNLTMHSRTCDKKFSVAASLTRHTMTHYGKRTYKCDICDMNCSSSTHLTIHSRTHTGERPYKCNICDKRFSRSYQLTMHTRTHTGEKPYKCDICDKWFSSTSQLTTHTRTHTGVKPYKCDMCDKPFSSTSQLTNHTRTHTGVKPYKCDMCDKPFSTSSNLTMHTRTHTGEKPYKCDICDKGFSAKTSIIIHIRTHTGEKPYKCDICDKPFSSTSQLTNHTRTHTGVKPYKCDMCDKPFSTSSNLTMHSRTCDKKFSVAASLTRHTMTHYGKRTYKCDICDMNCSSSTHLTIHSRTHTGERPYKCNICDKRFSRSYQLTMHTRTHTGEKPYKCDICDKGFSAKTSIIIHIRTHTGEKPYKCDICDKPFSSKSHLIIHTRTHTGEKPFKCDMCDKPFSTSSNLTMHSRTCDKKFSVAASLTRHTMTHYGKRTYKCDICDMNCSSSTHLTIHSRTHTGERPYKCNICDKRFSRSYQLTMHTRTHTGEKPYKCDICDKWFSSTSQLTTHTRTHTGVKPYKCDMCDKPFSSTSQLTNHTRTHTGVKPYKCDMCDKPFSTSSNLTMHTRTHTGEKPYKCDICDKGFSAKTSIIIHIRTHTGEKPYKCDICDKPFSSTSQLTNHTRTHTGVKPYKCDMCDKPFSTSSNLTMHSRTCDKKFSVAASLTRHTMTHYGKRTYKCDICDMNCSSSTHLTIHSRTHTGERPYKCNICDKRFSRSYQLTMHTRTHTGEKPYKCDICDKRFSSTSQLTTHTRTHTGERPYKCDICDKPFSSKSHLIIHTRTHTGEKPFKCDICDKVFSVKSSVIKHIRTHTGVKPYKCDICDKGFTKTFYLRKHTRTHTGV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-