Meup022441.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrosiphum euphorbiae
Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:50488143-50491682[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.0093 1.2 11.6 0.3 5 23 21 39 20 39 0.96
2 41 1.4e-05 0.0018 20.5 1.1 1 23 45 67 45 67 0.98
3 41 0.00049 0.064 15.6 0.9 1 23 73 95 73 95 0.98
4 41 8.5e-08 1.1e-05 27.5 2.2 1 23 101 123 101 123 0.98
5 41 0.00011 0.014 17.7 0.3 1 23 129 151 129 151 0.98
6 41 1.9e-06 0.00025 23.2 1.4 1 23 157 179 157 179 0.98
7 41 1.9e-06 0.00025 23.2 1.4 1 23 185 207 185 207 0.98
8 41 1e-07 1.3e-05 27.2 0.9 1 23 213 235 213 235 0.98
9 41 0.00042 0.054 15.9 0.5 1 23 241 263 241 263 0.98
10 41 1.9e-06 0.00025 23.2 1.4 1 23 269 291 269 291 0.98
11 41 1.4e-05 0.0018 20.5 1.1 1 23 297 319 297 319 0.98
12 41 7.2e-05 0.0094 18.2 0.8 1 23 325 347 325 347 0.98
13 41 2.9e-05 0.0038 19.5 0.9 1 23 353 375 353 375 0.99
14 41 7.2e-05 0.0094 18.2 0.8 1 23 381 403 381 403 0.98
15 41 1e-07 1.3e-05 27.2 0.9 1 23 409 431 409 431 0.98
16 41 0.00026 0.035 16.5 1.0 1 23 437 459 437 459 0.98
17 41 1e-07 1.3e-05 27.2 0.9 1 23 465 487 465 487 0.98
18 41 0.022 2.9 10.4 0.3 5 23 497 515 496 515 0.95
19 41 1.9e-06 0.00025 23.2 1.4 1 23 521 543 521 543 0.98
20 41 7e-06 0.00091 21.4 0.8 1 23 549 571 549 571 0.98
21 41 1.8e-07 2.4e-05 26.4 1.5 1 23 577 599 577 599 0.98
22 41 0.00015 0.02 17.2 0.5 1 23 605 627 605 627 0.98
23 41 1.3e-07 1.7e-05 26.9 1.2 1 23 633 655 633 655 0.98
24 41 9.3e-05 0.012 17.9 0.4 1 23 661 683 661 683 0.98
25 41 6.7e-05 0.0088 18.3 0.4 1 23 689 711 689 711 0.98
26 41 2.1e-08 2.7e-06 29.4 1.5 1 23 717 739 717 739 0.98
27 41 6.7e-05 0.0088 18.3 0.4 1 23 745 767 745 767 0.98
28 41 7.2e-05 0.0094 18.2 0.8 1 23 773 795 773 795 0.98
29 41 1.3e-07 1.7e-05 26.9 1.2 1 23 801 823 801 823 0.98
30 41 1.9e-06 0.00025 23.2 1.4 1 23 829 851 829 851 0.98
31 41 1e-07 1.3e-05 27.2 0.9 1 23 857 879 857 879 0.98
32 41 9.3e-05 0.012 17.9 0.4 1 23 885 907 885 907 0.98
33 41 6.7e-05 0.0088 18.3 0.4 1 23 913 935 913 935 0.98
34 41 2.1e-08 2.8e-06 29.4 0.9 1 23 941 963 941 963 0.98
35 41 0.00011 0.014 17.7 0.3 1 23 969 991 969 991 0.98
36 41 7.2e-05 0.0094 18.2 0.8 1 23 997 1019 997 1019 0.98
37 41 8e-06 0.001 21.3 2.8 1 23 1025 1047 1025 1047 0.98
38 41 4.4e-06 0.00057 22.1 2.6 1 23 1053 1075 1053 1075 0.99
39 41 2.1e-08 2.8e-06 29.4 0.9 1 23 1081 1103 1081 1103 0.98
40 41 6.7e-05 0.0088 18.3 0.4 1 23 1109 1131 1109 1131 0.98
41 41 2.1e-08 2.8e-06 29.4 0.9 1 23 1137 1159 1137 1159 0.98

Sequence Information

Coding Sequence
ATGATCAATGGTTCGTGTAATCGGAGCTCAAAAGGGAGTCAGAGCCAATACTTCTTTAACGTGTGTGATAAACCGTTCACCAAAAGAAGCAATGGAACGGTCCACCAGAGGACGCACACGGGAGAGAAACCGTTTCCATGTGATGTGTGTGAAAAGTGGTTCAGTCAAAGCTCTCATCTAAATGTTCACCTGAGGACGCACACAGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGCGTTCCAACACCAACTCTAAACTTACAGTCCACCGGACGACACACACCGGAGAGAAACCGTTTCCCTGCGATGTGTGTGAAAAGTCGTTCAGTCAAAAGCATAATTTGACGGCCCACCAGAGGACACACTCGGGAGAGAAACCATTCCCGTGTGATGTGTGCGACAAGTGGTTCAACACTACCTCTGAGCTGATGGTACACCGGAGGACACATACCGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGCGTTTCAACACCAACTCTAAACTTACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGCGTTTCAACACCAACTCAAAACTTACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGTGATGTGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACACACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTCTGATATGACGGTCCACCGGAGGACACATACCGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGCGTTTCAACACCAACTCTAAACTTACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGTGGTTCAGTCAAAGCTCTCATCTAAATGTTCACCTGAGGACGCACACAGGAGAGAAACCGTTTCCCTGCGATATATGTGAAAAGTGGTTCAATACTAACTCTAAACTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTCCAGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTCTGATCTGACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTTCCCTGCGATATATGTGAAAAGTGGTTCAATACTAACTCTAAACTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTTCCATGCGATGTGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTAACTTTAAGCTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTTCCATGCGATGTGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGGGATGTGTGCAACAAGTGGTTCAACACTACCTCTGATCTGACGATCCACCGGAGGACACACACCGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAGCGTTTCAACACCAACTCTAAACTTACGGTACACCGGAGGACACACAACGGAGAGGAACCGTTtccatgcgatgtatgtgaaaAGCGTTACAGCACCAACTCTAAACTTACGGTACACCGGAGGATACATACTGGAGAGAAACCGTTTCCGTGTGATACGTGTGAAAAGTCGTTCAGTCAAAAGAGTACTTTGACGGTCCACCAGAGGACACACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTATGAGCTGACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGTGATATGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGTGATAAGTGGTTCAACAGTACCTCTGAGCTGACGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGCGATGTGTGTAAAAAGTCGTTCAGTCAAAAGAGTAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAATCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTCTGAGCTGACGGTCCACCGGAGGACACACACCGGAGAGAAACCGTTTCCCTGCGATATATGTGAAAAGTGGTTCAATACTAACTCTAAGCTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGTGATATGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTATGTGAAAAGCGTTTCAACACCAACTCTAAACTTACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGTGATGTGTGTGAAAAGTCGTTCAGCCAAAAGAATAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGTGATAAGTGGTTCAACAGTACCTCTGAGCTGACGGTTCACCGGAGGACGCACACAGGAGAGAAACCATTTCCGTGCGATGTGTGTGATAAGTGGTTCAACACTACCTCTGAGCTGACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTCCCGTGCGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAGTAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAATCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTCTGAGCTGATGGTACACCGGAGGACACACACCGGAGAGAAACCGTTTCCCTGCGATATATGTGAAAAGTGGTTCAACACTAACTCTAAACTGACGGTACACCGGAGGACACACACGGGAGAGAAACCGTTtccatgcgatgtatgtgaaaAACATTTCAACACCAACTCTAAACTTACGGTACACCGGAGGACACACACCGGAGAGAAACCGTTTACATGTGATGTATGTGAAAAGCGTTTCAACACTAACTCTAAACTGACGTTACACCGTAGGACACATACGGGAGAAAAACCGTTTCCGTGTGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAGTAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAACCATTCCCGTGCGATGTGTGCGACAAGTGGTTCAACACTACCTCTGAGCTGACTGTACACCGGAGAACACACACCGGGGAGAAACCGTTTCCATGCGATGTGTGTGAAAAGTCGTTCAGTCAAAAGAGTAATTTGACGGTCCACCAGAGGACGCACACGGGAGAGAAATCAAACGGTGTGACGTGTGTGAAAAGTTGTCCAGTCAATTCTGCAATATAA
Protein Sequence
MINGSCNRSSKGSQSQYFFNVCDKPFTKRSNGTVHQRTHTGEKPFPCDVCEKWFSQSSHLNVHLRTHTGEKPFPCDVCEKRSNTNSKLTVHRTTHTGEKPFPCDVCEKSFSQKHNLTAHQRTHSGEKPFPCDVCDKWFNTTSELMVHRRTHTGEKPFPCDVCEKRFNTNSKLTVHRRTHTGEKPFPCDVCEKRFNTNSKLTVHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCDKWFNTTSDMTVHRRTHTGEKPFPCDVCEKRFNTNSKLTVHRRTHTGEKPFPCDVCEKWFSQSSHLNVHLRTHTGEKPFPCDICEKWFNTNSKLTVHRRTHTGEKPFQCDVCDKWFNTTSDLTVHRRTHTGEKPFPCDICEKWFNTNSKLTVHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCDKWFNTNFKLTVHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPWDVCNKWFNTTSDLTIHRRTHTGEKPFPCDVCEKRFNTNSKLTVHRRTHNGEEPFPCDVCEKRYSTNSKLTVHRRIHTGEKPFPCDTCEKSFSQKSTLTVHQRTHTGEKPFPCDVCDKWFNTTYELTVHRRTHTGEKPFPCDMCEKSFSQKNNLTVHQRTHTGEKPFPCDVCDKWFNSTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCKKSFSQKSNLTVHQRTHTGEKSFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDICEKWFNTNSKLTVHRRTHTGEKPFPCDMCEKSFSQKNNLTVHQRTHTGEKPFPCDVCEKRFNTNSKLTVHRRTHTGEKPFPCDVCEKSFSQKNNLTVHQRTHTGEKPFPCDVCDKWFNSTSELTVHRRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCEKSFSQKSNLTVHQRTHTGEKSFPCDVCDKWFNTTSELMVHRRTHTGEKPFPCDICEKWFNTNSKLTVHRRTHTGEKPFPCDVCEKHFNTNSKLTVHRRTHTGEKPFTCDVCEKRFNTNSKLTLHRRTHTGEKPFPCDVCEKSFSQKSNLTVHQRTHTGEKPFPCDVCDKWFNTTSELTVHRRTHTGEKPFPCDVCEKSFSQKSNLTVHQRTHTGEKSNGVTCVKSCPVNSAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-