Meup060355.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010001661.1:42013-42829[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-05 0.0074 17.9 0.0 2 34 3 35 2 43 0.88 2 2 0.22 1.1e+02 4.6 0.0 22 35 74 87 68 92 0.82
Sequence Information
- Coding Sequence
- ATGTCACGAGCAAACATTCAAGATGCGATTAATGCCGTCACAATGGGTATCTATTCCTGTGGACAGACAGCAAGGAATTATAATGTACCGGAGACAACCCTTAGGGACCTTATAAAGAAGTTGGGCATTGTTCCCCCAAAAgCATCTCGAGGTTATGTCAAGGCGGATGCAAATCCGAGTTTGAAGGAGAATGAGGAGAAAAAATATAACGTTAGTTTAGCCTCACGTCATGCAAACGTACCACGTACTACGCTTAGAAATGATTTGAAAAACTATGATAAAATCAAACaGTGTCTTCCACCGGCGCCCAAACAGGCCAAACCGTCGGCCAATCCGTCTGCTGAACCGTCTACCGAACTGTCTGCCGAATCGTCGGCCAAACCGTCTGCTGAACCGTCTACCGAACTGTCTGCTGAATCGTCTGCTGAACCGTCTACCGAACTGTCTGCCGAATCGTCTGCTGAACCGTCTGCCGAATCGTCGGCCAAACCGTCTGCTGATCCGTCTACCGAACTGTCTGCCAAACCGTCTGCCGAACCGTTGCCTGAGAGAAATTTAGTCGTAAAAATTGTGTCGAAATTCAAGGGCAGGAAATGCAGATAA
- Protein Sequence
- MSRANIQDAINAVTMGIYSCGQTARNYNVPETTLRDLIKKLGIVPPKASRGYVKADANPSLKENEEKKYNVSLASRHANVPRTTLRNDLKNYDKIKQCLPPAPKQAKPSANPSAEPSTELSAESSAKPSAEPSTELSAESSAEPSTELSAESSAEPSAESSAKPSADPSTELSAKPSAEPLPERNLVVKIVSKFKGRKCR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -