Meup019696.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:33421287-33422955[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-09 2.1e-06 29.2 0.0 1 41 16 57 16 59 0.95
Sequence Information
- Coding Sequence
- atgtcaGTGAGAAGAAAGTTTGGTGCTAGGCGATATAAAACATACACAGATGAAAATCTAGAATCAGCTTTAAGATTGGTTTCTAGTGGTGAAATGAGTCTCAGAGATATTAGTGCTATGTACAACATTTCAAAATCAACTTTAAGCAGAAaacataataagaaaaatatgaaaaacgtCGGCCATCCTTCTGTTTTGACAAAAGTCGACGAAGAAGCTCTAGTTAATGGACTTATAGCAGCAAgTGTTGTGTGGGCTAGATCTTTTCTAAACAGACACAGAGATAACCTCAAAGTAAGATTAAGTGAAAATATAAAGCGATGTCGTTCTGGTGTTGATAGtgatataattagtaattactttgATGAACTGAAGGTCACTTTGAAAGATGTCAAACCGGAGGCAATATTGAATTATGATGAGACAAATTTTACCGACGATCCAGGAAAAGTCAAAGTCATTGTTCGCCGTGGAGCCAAACATGATGAAAGAATAATCGATGCATCCAAAAGCAGTACATCTTTAATGTTCTCAGGAACAGCTTCAGGCATTTTATTAccaatttatatagtatataaagcCGACCACTTATATAATGCTTGGACTACAAATGCGCCCAAAGGAACTAGGTTTAACAGGTCACACAGTGGATGGTTTGACACAACTATTTTTGAAGATTggtttttttctattgttcTCCCTTACTTCAAAAAATTAGGTGATCAAAAAAAAGTGATGATAGGTGACAATCTTTCCAGCCATATTTCACAAAAAGTTATACAATGTTGTCAAGATAATAACATAAGTTTTGTCTTGCTACCTCCTAACAGCAAACATCTTACCCAACCGTTAGATGTTGCTTACTTCAGACCATTAAAAATCAAATGGCGACAAGTCCTTAATAGTtggaaagaaaaaaacaaaggtAATGTTCCAAAAACTCAATTTCCTCGACTTGTTGGCTTAACTATGAAAGAGCTTGGAAATCAatcatcaaaaaatttaatagctGGTTTTGAATCCTGTGGTATTGTGCCATTAAATCCACAAAAAGTGTTAAATCATATACCTAACTCAAATTCTAATGCAATGTCTGATAGTTGGTTAAGAACAATTGAAGGTTTCCTCGAACAGCAAAGGAGGAAAGAAACAACTGTAAAGACAAAAAAACGACGCCTTACAGTTCATCCAGGACAAAGTATAGCTCACCCAAATACCAATAGTGATGATGAAGATGATCCTGTCATTAATGTTGTTCTTTCAGACCAAGATGAAATTTCTGTCAATGAAAACTTAATTGAACCTATTCCTAAAACTAGTAGATCAAATCAGAATAACATATCCCATGATGTAGAAAATAACTTACTTAATGAAcctgaacattttaatattggtgATTtcattttagttaaatatttgtataatgctGGAACTAAAAAAGAACATTTCAAGTTTTTTCCTTGTCTCATTAAAGAAAAATCATCTGACAGTATTTATGAATGTAAATTTATGAGAAATTATAAAGGTCAAAcagaaacatttatatttccTAGTGTAAAGaggtaa
- Protein Sequence
- MSVRRKFGARRYKTYTDENLESALRLVSSGEMSLRDISAMYNISKSTLSRKHNKKNMKNVGHPSVLTKVDEEALVNGLIAASVVWARSFLNRHRDNLKVRLSENIKRCRSGVDSDIISNYFDELKVTLKDVKPEAILNYDETNFTDDPGKVKVIVRRGAKHDERIIDASKSSTSLMFSGTASGILLPIYIVYKADHLYNAWTTNAPKGTRFNRSHSGWFDTTIFEDWFFSIVLPYFKKLGDQKKVMIGDNLSSHISQKVIQCCQDNNISFVLLPPNSKHLTQPLDVAYFRPLKIKWRQVLNSWKEKNKGNVPKTQFPRLVGLTMKELGNQSSKNLIAGFESCGIVPLNPQKVLNHIPNSNSNAMSDSWLRTIEGFLEQQRRKETTVKTKKRRLTVHPGQSIAHPNTNSDDEDDPVINVVLSDQDEISVNENLIEPIPKTSRSNQNNISHDVENNLLNEPEHFNIGDFILVKYLYNAGTKKEHFKFFPCLIKEKSSDSIYECKFMRNYKGQTETFIFPSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01347013;
- 90% Identity
- iTF_01347013;
- 80% Identity
- -