Basic Information

Gene Symbol
-
Assembly
GCA_949089665.1
Location
CARXXK010000002.1:1041036-1045914[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.2e-06 0.0025 19.4 0.2 4 41 5 43 4 47 0.84
2 2 0.00085 0.4 12.3 0.0 4 36 60 92 57 98 0.91

Sequence Information

Coding Sequence
ATGTCTTTCAATAACATGGAAAGTGCTTTGAGGGCTTTGAAAGCTGGAACGCAGTCCATCGCCAAAGCCAGCCGCTTTTATGCGATCCCCGAAACTACGCTCCGCGAGTACGCCCGGAGAGAAGGGATTACCGTGAAAAAGGCAACCCGCGGCTACGTCCCGACCAAGGATAACGTTGCATTGAAGGAAGCGATTGATTTAGTGGTTTCTAAAGGTCTACCCGTAAACACCGCGGCAATCATTAAAAAAGTTCCAAGAACCACGCTTAGAAAGGCGCTCATGGCTAGAACCATTGCTGAGGCCGGTATACCAAAAGCGGCCAAAAAAAACGCGCGTTACGAGGTGAATAGCGCACTTCTACGATCCATCTCACCTCCGAAAAAAGTGTCTTCGCCGTGTAAAAACTCTAACCATACCGGGGTGGTTGTGATGGAACCAGAGGCGACGGACCGAATTCTTGGGAAAAAAGGGGCTACAACTCCGATTGTAGTTTTGGAGACTTCCGTACAGGAAAATGGCCAAAAACCCGTCGAGAAAGGAATGGAAAAGCTTGTAGATTTGGAGACTTCCGTACCGGAACCTAGGAAAAAGCTCGTCAAAAAagttgttttgaaATTCAAAGGGGAAAGATGCAAACGGGTCAAGCGCTTGGTGGAGGTCCACGAGCGCTCGGCGTATTATCCGAGAAAACCCGCTTATGatGAAGAACCTAAGCAAGACCGTGCGGAGGTTGCTCATGAGGAACCTAAGCAAGACTGTGCGGAGGTTTCTCATGAGGAACCTAAGCAAGACTGTACGCAGGTTTCTGATGATGAGCCCGAAGTCACTGGGCCAATGATGCCGATCAGCACACACGTACGGTTTTTGGAAGACGTGACTTACACACCCGTCGTTGTGGATGACGACCAGGAGGCCCTAATGGTGTGCACCAAAAACCCTAACGAAAATGCCGTGGATGAAGATCCGTACGCCTTCGTCGACGACGAACCGGCTGTCAAAAAAAGGGCGCTCGACGTGGACGCAGTCTACACGCCGTCGCCATCCACGTCACCTGAACCGTCACGGGACCACAGCaatcgtaatattatgtcacCGGTAGCAGGTCCATCATGGGCCGACGGACAAGAAGTATTGAATTACCTTCCGGGTTCCGAAGACgCCATGATTGTCGGAAACGATCGACGGTCGTTGTCCACGTCGCCCGCTCCTTCGGTAGTTCTAAAAATTGCGTCTCCACTGATATTGAACGGTGATTCCGACAGTGACGGAGAACCGGAGGCAAGACGTCCAGTCCGGATGACTTGTgtccataggcCGCTGGCACAAGACGTTCCTatTATCAAATATTGTCCGATGTGCACGTACACGACGTCGGGCAGCAAGTTAGACAGGCACATAACGAACAAACACAAGGCTCTCATTAAGAAACCGTTCAAACAAAACGTCACCGCAATTAGCAAAAAAATAGTCGCCGAATCGAGACGGTCCTACACGCTTGTCCCGATGTCGGCCATCAAGGCGAAGATGGGGCCGTATTGGGACGACAGGTGTTTCAGGAGCGTTGCACATGAACTGACAACTATGGGACGATTGAAGGTTTACGGAGGTTCTTGGCACCTACCGGGTGTCAAAGATTACCCGAATCCTTTTTCGGACAACATTCAGACCGACCTCACGTCAGACGGAGTTGTAGACTTTCCGGTGCCCCCGATGGTGATAAAACCACCAAAGGTATTTGCACCATCCTCTCCAACAACACCAGTTGCTGCTGGAACATCACGAGGAGTAGAGACACCTTGCACAGCGTCGACGGAAGGACCGGTGACCACACCAACGGCTGGTGGGAAAAAATCaattagGATGTTGGCCAAGGACATGGGGTTGAACGATAGGTTGCCCAGTAGTCATCCCCTAATTTCGATGTTGGAGAAAACTTTGGTGAGGAGTCACGGGGAGGATTCCGAAGCCACCAAAAATTACAGTGCAAATGTCGCGAGGGTGTTGAACTTTGTGCACAAAACGTTATTAGAAGAACATAGACCTCCAAAACATTGGGCCGACCTGGTATCGTGTGACGTCTCAATTTACGAGAGATACATAGAGCTCCGTGAAAGTATTGGTCAGACGAAATCGACTACCATCAATTATCTTAAAAACCTGCGGATGTTGTTCGTCAACATTATCAATTGTTATACTCTCGAGGACGAAAGTTTCCCTAAAGGATTTGATCTCTCCCCCTGCACAAAAACGGTCACCAAAATCAAACTTTTGATGCACCACCTGGACACGGTGTACAAAAGAAAAACGAAAGAACAGCCGGGGGAGCTGTTCTGCCGGAAGACAAAAGAGGCCGAAGACATACCTGACCACGCGGAGGTTGTCGCGAGCCTGGCTGAAATCAAAACGCATATACCGACCTACCTCGATGCTTTGGAGGAGGCCTTCGGGAACGAAGGTGTGTTCTCCGTCCGAAGCGAGAAAAATAGCCCGGCAGCGCAGAGACAGatatcgAGTAACTGGAGGAAACTGACGTGTGGCCTGGCGATCGATATCCTGTGGACGTCAAAACAGAGGAGCGGGGCGGTTGCGAACATGACCATCGTCGAGTGGGAAGCCAGGAAACACCATCTCACCAGTGCCGTCGTCACGGTGGCTGATCACAAAACGGGCTACAAGGAGCCGGCCACTGTCGTGATTGACGAGGACGTTGAACAACTAATGGAACGATATTATCAGTTAAGACGGCGAACGGGGTACGACTGCCCCAACTTCTTCGTCACCAACCGTGGCGGCAGAATAGTGAAGCTGTACGACGAGATCAGCAACATCTTCGGTGCGAACCTTAGTGCGGGGAAATTTAGGAAGATGGTAGAAACGAGTAGCCGAGGTCACGATGCTGTGACGTCTTCGGGCATCGCGAAGGCGTTACAGCATTCCGAGTCGACGGCACTACAGTATTACCGTTTACCAGACACGGCCGAAGCCATAAGACGACAAGACGATTTAGACAAGGTGACGCATACGGCTCTCGTCAAGTCATATATAGAAGAACAtTTCGAAGACTTTTTCGCACTCGTTGCTTATTCAAAATTCCCGGCACCGGACGAGGCCATGGACAGAATAAAGGAGCACGACATTTTCCTCAAATACCCAATGGCCAGCATCGACGTGCCGTACATCATGTCGCTCATGGATAGATTCGACAGTAGCGTGATGGCGGATCGTGTCGAGATCTTATATGACGTGCTAACCGATGCCGGATACGATAGGAGGAACATAACCACCTATGCCATCACCGACGTGGCGAAGAAAAAGAAGCTGCACTATTTTATAGCTAACCAAAAATACAGCCAGAAAATCATAAACAAAGTGAAGGCAAGGGTTATGAGAGGGGATTGA
Protein Sequence
MSFNNMESALRALKAGTQSIAKASRFYAIPETTLREYARREGITVKKATRGYVPTKDNVALKEAIDLVVSKGLPVNTAAIIKKVPRTTLRKALMARTIAEAGIPKAAKKNARYEVNSALLRSISPPKKVSSPCKNSNHTGVVVMEPEATDRILGKKGATTPIVVLETSVQENGQKPVEKGMEKLVDLETSVPEPRKKLVKKVVLKFKGERCKRVKRLVEVHERSAYYPRKPAYDEEPKQDRAEVAHEEPKQDCAEVSHEEPKQDCTQVSDDEPEVTGPMMPISTHVRFLEDVTYTPVVVDDDQEALMVCTKNPNENAVDEDPYAFVDDEPAVKKRALDVDAVYTPSPSTSPEPSRDHSNRNIMSPVAGPSWADGQEVLNYLPGSEDAMIVGNDRRSLSTSPAPSVVLKIASPLILNGDSDSDGEPEARRPVRMTCVHRPLAQDVPIIKYCPMCTYTTSGSKLDRHITNKHKALIKKPFKQNVTAISKKIVAESRRSYTLVPMSAIKAKMGPYWDDRCFRSVAHELTTMGRLKVYGGSWHLPGVKDYPNPFSDNIQTDLTSDGVVDFPVPPMVIKPPKVFAPSSPTTPVAAGTSRGVETPCTASTEGPVTTPTAGGKKSIRMLAKDMGLNDRLPSSHPLISMLEKTLVRSHGEDSEATKNYSANVARVLNFVHKTLLEEHRPPKHWADLVSCDVSIYERYIELRESIGQTKSTTINYLKNLRMLFVNIINCYTLEDESFPKGFDLSPCTKTVTKIKLLMHHLDTVYKRKTKEQPGELFCRKTKEAEDIPDHAEVVASLAEIKTHIPTYLDALEEAFGNEGVFSVRSEKNSPAAQRQISSNWRKLTCGLAIDILWTSKQRSGAVANMTIVEWEARKHHLTSAVVTVADHKTGYKEPATVVIDEDVEQLMERYYQLRRRTGYDCPNFFVTNRGGRIVKLYDEISNIFGANLSAGKFRKMVETSSRGHDAVTSSGIAKALQHSESTALQYYRLPDTAEAIRRQDDLDKVTHTALVKSYIEEHFEDFFALVAYSKFPAPDEAMDRIKEHDIFLKYPMASIDVPYIMSLMDRFDSSVMADRVEILYDVLTDAGYDRRNITTYAITDVAKKKKLHYFIANQKYSQKIINKVKARVMRGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-