Meup018459.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- -
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000002.1:26878949-26881203[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-07 0.00012 23.6 0.0 7 38 9 41 6 45 0.88 2 2 0.0072 3.5 9.3 0.0 3 37 60 94 58 96 0.90
Sequence Information
- Coding Sequence
- ATGTCGTCGAGAGTGAACGTACAGAACGCTCTGAACTCGATATCCATGGGGGCATTGTCGATTGGGCAGGCAGCCCGTCAACACCATGTCCCGGAAACTACCCTCAGGGAACTTGTGAAGAAATTACGAATTGTTCCGAAAAAAGCATCCAGAGGCTatgtaaaaactgaaaataatcaACAGCTTTCGAGAGCTATCGAACTTGTTCATAAGAACAAGTATGCCGTAAATTTAGCTTCCCGAAAGGCAAACGTACCACGTACGACACTGGGCAAGGCtctaaaaatttttgaaaagatTAAAGggtCTCTTCCATCCCCTTCAGGGGCTATAACTCCGAGTGTGGTTTTAGAGACTTCCGTACCAGAACCCAGGAGAAAGCTCGTCAAAAAAGGAATGGAAAAGCTTGTGGTTTTAGAGACTTTCATACCGGAACATGGCCAAAAACACGTCGAGAAAGGAATGCAAAAGCTTGTGGTTTTAGAGACTTCCGTACCGGAACATTGCGAAAACCTCGTCGAGAAAGGTAACggtaacatttttctttttaacgaAGGCATTATTGAGTTGTATCTTTCCGCAGGAATGGAAAAGCTTGTAGTTTTGGAGACTCCCGTACCGGAACCCAGGAGAAAGCTCGTCAAAAAagttttgaaattcaaagGGAAAAAATGCAAACGGGTCAAGCGCTTGGTGGAGGTCCACGAGCGCTCGGCGTATTATCCGAGAAAACCCGCTTATGatGAAGAACCTATGCAAGACCGTGAGGAGGTTGCTGATGAGGAACCTAAGCAAGACTGTGCGGAGGTTGCTGATGAGGAACCTAAGCAAGACTGTGCGGAGGTTGCTGATGAGGAACCTAAGCAAGACTGTGCGGAGGTTGCTGATGAGGAGCCCGAAGTCGAAGAGCAGGTTATCACTGGGCCAATGATGCCGATCAACACATATCTAACGAAAATTCCGTGGATGAAGATCCGTAGGCCTTCGTCGAGGACGAGCCGGGTATGTACCGTTTATACTCTCCTAACGAGTTTACGATTTTTATTTAACGTTATCGTTTCAGAGTTAGAACACTTTAATTGTGTCCCGGGATATATGTCGAGCAAACTTGAGGTGGACAAGGTTTACACACCATCTCCACCTCATCTCGAGGAAATTCCGCGATCGTCTCCGGTCATGAGTCGCTGTCATTTACGTCCGTCGTGGCTGTCGAGAGAGACGGCTTATTGGTCAACGTTGAAAACCGTAAATGATGTCGCTCTGGTTGACGAAGAACAATGGAAGTTAGTCCCGGGCACGTCGAGGGACACGGCATTTTCACGTGCCTCATTTGAACGGCAACAGTCGTCGAATTCGTCGTCGGCCACCGAATCGTTGTCTGCGGTGATCGGAAAGAAGAGTCCCCTGCAATATAACCACAGTAGCGAAGACGACGATGATGTCGAATTCAGCTGTGGCAGAAAACGAAGGCTGAATGTCACAGAACGCTACAAAAACGTTATTAGCAATAAATTGACGAAATACTGCCCAATTTGTAACTACAAGACCGACGATAATAAGCTGACCAGCTATTTATTGAGCTGTTTGATCGTATGA
- Protein Sequence
- MSSRVNVQNALNSISMGALSIGQAARQHHVPETTLRELVKKLRIVPKKASRGYVKTENNQQLSRAIELVHKNKYAVNLASRKANVPRTTLGKALKIFEKIKGSLPSPSGAITPSVVLETSVPEPRRKLVKKGMEKLVVLETFIPEHGQKHVEKGMQKLVVLETSVPEHCENLVEKGNGNIFLFNEGIIELYLSAGMEKLVVLETPVPEPRRKLVKKVLKFKGKKCKRVKRLVEVHERSAYYPRKPAYDEEPMQDREEVADEEPKQDCAEVADEEPKQDCAEVADEEPKQDCAEVADEEPEVEEQVITGPMMPINTYLTKIPWMKIRRPSSRTSRVCTVYTLLTSLRFLFNVIVSELEHFNCVPGYMSSKLEVDKVYTPSPPHLEEIPRSSPVMSRCHLRPSWLSRETAYWSTLKTVNDVALVDEEQWKLVPGTSRDTAFSRASFERQQSSNSSSATESLSAVIGKKSPLQYNHSSEDDDDVEFSCGRKRRLNVTERYKNVISNKLTKYCPICNYKTDDNKLTSYLLSCLIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -