Meup000517.1
Basic Information
- Insect
- Macrosiphum euphorbiae
- Gene Symbol
- retn
- Assembly
- GCA_949089665.1
- Location
- CARXXK010000001.1:7701230-7704127[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-18 3.8e-14 54.8 0.0 27 89 2 62 1 62 0.94 2 3 0.93 6.6e+03 -0.5 0.2 62 86 146 168 125 169 0.56 3 3 6.8 4.8e+04 -3.3 0.1 10 19 267 276 264 287 0.53
Sequence Information
- Coding Sequence
- ATGGCCAAACGCGTGTTGGATTTGTACACCCTATATAAGTTAGTCGTCCAGAGAGGTGGCATTGTCGCGGTCATCACCAAGAAGTTGTGGCAAGAGATCATCCGAGGTCTGGGCCTACCTCCTTCTATAACGAGTGCAGCATTCACATTACGCACACAataCGTCAAATATTTGTACGCCTACGAGTCGCGGATGAACCAGTTCAGTACGTTGGACGAACTGAACATGGCGATAGCGGGCAACCGGCGCGAAGGCCGGCGAAACAAGTCGCTCATGTATTCGGACATGCCACCGCCACCACCCGGGCACCCGCACCACCATCACCACAGCCATCACCAACAAGTGCACGGTGGCCACCCGCACTCAATGATGGGCAGTGGTGCCCCGCCGCAGCCGTCGtcacaacagcaacaacaacaacaacaacaacagcagcagcagcatcagcagcagcaacagccaCCGTCGTCCCATCACCATCACCATTACGCCAACGTGTTGGCCGCCGAAGATCGGTTTCGTCACCTTGCAGCCGCCATTATCGACAATCACCATCACGCGGCCGTTGctgcagccgccgccgccgcggccGGCGTTGGTGTCGACCACCCCAGACTGCGGATGCAATCGTGCAGTCCACCGCAGCATCAGCAACAACAATTGCAACTGCAACCAGAATGCAAGACGTCCGCGGTCGCGTTGCACCAGACGCCCCGATCACCGGCCACCATCGGACTTCCACCACCGCCACCCATGCCACCGTCGTCGCTGTTCAACGGCCACCAGCCGTCGTCGTACCAACAACTCCAtcaacagcagcaacagcaacatCAGTCCAACGCCGTCCAGTCCACCAACGAGCAGACGAACAAACAGAGAGGTTAG
- Protein Sequence
- MAKRVLDLYTLYKLVVQRGGIVAVITKKLWQEIIRGLGLPPSITSAAFTLRTQYVKYLYAYESRMNQFSTLDELNMAIAGNRREGRRNKSLMYSDMPPPPPGHPHHHHHSHHQQVHGGHPHSMMGSGAPPQPSSQQQQQQQQQQQQQHQQQQQPPSSHHHHHYANVLAAEDRFRHLAAAIIDNHHHAAVAAAAAAAAGVGVDHPRLRMQSCSPPQHQQQQLQLQPECKTSAVALHQTPRSPATIGLPPPPPMPPSSLFNGHQPSSYQQLHQQQQQQHQSNAVQSTNEQTNKQRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -