Basic Information

Gene Symbol
L
Assembly
GCA_963924015.1
Location
OZ001257.1:43684909-43698237[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.8e-06 0.00091 20.2 1.4 1 23 62 84 62 84 0.98
2 19 0.45 47 5.4 4.1 1 23 90 112 90 112 0.98
3 19 1.3e-06 0.00013 22.8 4.3 1 23 118 140 118 140 0.99
4 19 0.00028 0.029 15.5 0.2 1 23 146 168 146 168 0.99
5 19 0.00029 0.03 15.4 0.6 1 23 329 352 329 352 0.96
6 19 0.46 48 5.3 0.0 2 23 362 384 361 384 0.88
7 19 0.26 27 6.1 0.1 3 23 472 492 471 492 0.97
8 19 0.014 1.5 10.1 0.1 3 23 506 526 505 526 0.96
9 19 0.00013 0.013 16.5 0.6 1 23 535 558 535 558 0.94
10 19 4.7 4.9e+02 2.2 0.2 1 23 563 586 563 586 0.91
11 19 1.4 1.4e+02 3.8 1.1 2 23 662 683 661 683 0.94
12 19 0.00038 0.04 15.0 0.5 1 23 688 710 688 711 0.96
13 19 0.00056 0.059 14.5 0.9 2 23 816 838 815 838 0.96
14 19 0.0045 0.47 11.6 1.4 1 23 847 870 847 870 0.94
15 19 0.0045 0.47 11.6 0.3 2 23 1058 1080 1057 1080 0.93
16 19 0.0063 0.66 11.2 0.3 1 23 1091 1114 1091 1114 0.96
17 19 0.23 24 6.3 0.3 2 23 1126 1147 1125 1147 0.95
18 19 0.011 1.2 10.4 0.1 2 23 1156 1178 1155 1178 0.94
19 19 0.082 8.5 7.7 1.5 1 23 1185 1208 1185 1208 0.95

Sequence Information

Coding Sequence
ATGGCTGAAGCTTTGGGTACCGGAAGTTCTTCGTGGCATAGCGAAGACGGTGGTCCAGTGTCAAGAAGGGGTGGTGACACGCCATCTTCTTGCGCTACTCCAACATCAGCGAGTTTTCCTTCAGAACCGGAAGCGGAGGGTGAAAATGGCTCGCATACGGATCTTAACAACCCTGCGGCTCCTTATCCCTGCCAATTTTGCGATAGATCGTTTCCCAGATTGAGCTACTTGAAAAAACATGAACagAGCCATGGTGATCAGATGCCCTACAAATGTAGCTGGTGCGCAAGATTGTTTAAACATAAACGGAGCAGAGATAGACACGTGAAATTGCACACTGGCGACCGGAGATATCGATGCACGCACTGCGAGGCCGCCTTTTCAAGAAGCGACCACTTGAAGATTCACATGAAAACCCACGACACCCAAAAACCGTATCAATGCACCGCTTGTTCACGGGGTTACAACACTGCAGCAGCATTGACATCCCATATGCAATCCCATAAAAAGCATCACGGAATGACCCAGAACTCTAAAATCGAGTCTGATTTTGGACGTCGTAGTGTTTCTTCGCACAGCACAGCGTCACCGCCGGTACCAAACTCGCCTTCACCTAGTTTGAACCTGACCCTGGCGTCGAGAAATCAGAGTAAAGGTTCACCGATGGGTCCTAGTGCCTCAAACACACCGATTCTTCACTCTCCTTTGAAGTTAACCTGCATGTATTGCACTCGGGACTCTTTCACCAGTATGCAACAACTCCAAATGCACGTCCATGCGATGCACCGTTCGATATTGAGCGGTGAAAATCTCACCATGCCATCGCCAGGAAGAATATCCGAAGTCTCGAGCCTATCAAGAGACAAGATATTCGATGTACAGGATAAAACGTTCAaagaaaacgacaaaaaacACTCCGAAGACCGCGAGAAGAGTGTCGAAAGTGCCAATCTCTGCGTAAAAAAGGAATTCTTCGATAATAGTTTCTCGTGCGGACAATGCACCATGAAATTCTCCAACCTAAGCACCCTCAGGGATCATTTAATATCGATACACCGCGTCGACGGATTTGGGGCAACCCTGATGTGTCCGTTATGCGGTATACCCTGCGTCTCTGCCGCTGCTTACGCTGAACACTACGTCCTCCAACACTGCGACGATCGTAGGATAAACTACCCAGAAAATACTGACTACAATGATCTAAAGTCAACATCAAGAAGCAGCCACAAAAGCGAGGCGTTAAACTACGGGACAAAGTCATCAAGGGATTTGGAAAGACCGGTAAAATCCAGCCGGGAACTTCccgaatctaaaataatttctaacggTAGCTACGAGCCGAAAGAACAACCTGCTGATCTGACAAATAAACATGGAAGATCATCGGAAGCATATTCAGCCGGTACTCTTCTTTGTGGTCAGTGTGGTGCGGCTCTGAAGGACTTTGAATCATTCCGTGAGCATTTGGCGCGTCATTTACAGGCCGATCATCGTAAAGAGGTGGTTAAAAATCCGTGCCCAAAATGCGACGCTTCTTTTCAAGACCGTGATGAAATGCTGGGCCATTTAACGAAGCACTTTCTTGGTCAGGTTACCAAGGAATACGTGTGCGGTGTTTGCAAAAAGTTTTACCCCCATCCGGACCTACTGCAAAGACATTTGCTCGACTCGCATGCCCACCATCTTTACAGATGTGCACTTTGCAGAGATACTTTTGACTCGAGAGTTGCGATCCAGGTTCATTTCGCCGTTAAACATAGCCAGGAGTGTAGGATTTATAGATGCAACGTATGTCCGACAACAAACAACGAGAATTCACCTGGCAATTCGCCGGGTGGTGCGAACAGGAACCTGTTTCGAAGTGAGGCAGAAATGGCCAGTCATGTTAGGGCAGTTCACGCACCTCCAGCTACTGTTATAGACAGTCCAATGATGCCGAGGAGTCCGGCGACGACACCGAGTACATTGCAGAACGCTAATTTGAGGTGTGTTTTTTGCGGTGTTTGTTGCGCTTCTGATCTCGAGCTTCAGTTACACCTCGCAAATCATTCAGCAAGTTTATACCGTTGTCCTATATGCCGTGAAGGTTTTGCGGTAGAATTTCTTCTGGATAAACACATGCAGTCTCATCATCTAGCAAGTTTACCTGCAACCGGTCAGAATCATAACCAACGTGAAAATGGTAGGGGAATAAACGTCAGGATTCATACTGGCGATGATAGTGGGAGAAACCAGAAAAGGGGAAGGTCCCCTGCTAATAGTAATAACAACTCGGTTAGTCAGAGAGATAACAATAACAAGAGGCCAAATTATGGTAGCGGAGTTCAAAATTGCGAACTTTGCGAAAGAGGCGAGTTTGCTAATGACGCTGAACTCCAAGCCCATAAAAAGCTCGTTCATACACCGccaaaaactcaaaataagTCGCTGGCTACTCTGAGTTTAACTTGTGCCTATTGTGGTGAGATTTGCCGGTCTAGAACAGAACTTGAATCACACACTAGGATACAACACGCTTCAAACGAGCCGGGAGGTCGACACAAGTGTAACATATGCGACGAGGTTTGTCCCTCTGGTTCTAACTTAGCTGAACATAAACTTCAGAAACACTGCAAGATACTTCTGAGTGACACGTGCGTTGTGTGTCGCGGTATACTCAACTCTGAGAACCAATTTCTTGAGCACGTGCAAAGACACAGCCTAGAGAATCTCGACCCCCAGCAGAGGGTCGATAACTCGTTACCTCATCTTCCGTCACCTTGCGTTATATGCCGTCAGACGCTGATCAGTGACCTAGAATGCCGACTGCACGCAAGGTACCATCTAAGAGCGACTAGTTCACAAAATTCGAGTCCAAATCTGAGCCGTAAATCACCAAATCCAAGCTGCTGTCTTTGTCTGCGAGAATTTCCTGCAGAAGATTTTGTCAGTCTACCTTCAAATCCCGTTAGTGGTGGAAGCCAGTCCTTACAGGTGTGCAAGTCCTGTTATGTCCGACACACTCAAGGTTTACCAATTCTTCACTCACCCTACGAGCACGTTCGTCATGGGACTAAAGAAGACCGTATTTGGGACCCGTCCAAGGATAAATGGGAGTCGAAATCTCGTCCTAAGGACTTCTCGACTGTCCAATTAGAACCCAAGGCTACCGTTACTGAAGACGAAATTCAAAGATGTGAAGACTGTGGTGTCAAGTTTGAACACATAGAGGAACTAGAAACTCACAGAGCCCAGGAACACAGCCAACGTGAAGATAGTCAACCCAAAACTTACACCTGCATTCAATGCCAGATATCTTTTGCAACGGAATCTGAAATCCAGAAACATGTGAGAAAGGAGCACCTAGAATCAGCAGGGAAATCTTGCGATGCTTTAAGGTGTCACTTGTGCCTGATGGACACTTCGAGTCCTCTTCAACTTCAAGCTCATCTAATCGAGCACTCTTTTGCCGGATGTTCAGCACTGAGTTGTTACATTTGTCAAGCATTATTCACGACGCCTATTGGATTGCAGAACCACATGTTGCAACAACACGGTCTAGGAGCTCGACCTTACGACTGCAATTTGTGCAATCTTAAGTTCTTCTTTCGTGCAGAGCTCGACCATCATGTAGTGACATCGCATCGTGCAGGCAGAGACTCGATATCGCCTCGTGAAAGTCAATTACCGTCAACAACAGTTCAGGCGATAAAGAGTTTTGAAAGTGATGATAACACCAAGGAGAATGATGATCAAAGAACTTTACACGAAGTTAGAGTAAAGGATGAGATTATAGCTGTAAACGAAGAGGAAGATATTAACGTTGATGAACAAGAGGATGAGGCTCAAGATCGAAACCAGACAGAAGATGAAAATCGAGAACTAGAACGAGATGAAGAATTTAAAGAAGCAAAAATCGAGGCAAAAAAAGAGGCTGAAGAAACCCCAGAAAAAGGAGAATCGTGA
Protein Sequence
MAEALGTGSSSWHSEDGGPVSRRGGDTPSSCATPTSASFPSEPEAEGENGSHTDLNNPAAPYPCQFCDRSFPRLSYLKKHEQSHGDQMPYKCSWCARLFKHKRSRDRHVKLHTGDRRYRCTHCEAAFSRSDHLKIHMKTHDTQKPYQCTACSRGYNTAAALTSHMQSHKKHHGMTQNSKIESDFGRRSVSSHSTASPPVPNSPSPSLNLTLASRNQSKGSPMGPSASNTPILHSPLKLTCMYCTRDSFTSMQQLQMHVHAMHRSILSGENLTMPSPGRISEVSSLSRDKIFDVQDKTFKENDKKHSEDREKSVESANLCVKKEFFDNSFSCGQCTMKFSNLSTLRDHLISIHRVDGFGATLMCPLCGIPCVSAAAYAEHYVLQHCDDRRINYPENTDYNDLKSTSRSSHKSEALNYGTKSSRDLERPVKSSRELPESKIISNGSYEPKEQPADLTNKHGRSSEAYSAGTLLCGQCGAALKDFESFREHLARHLQADHRKEVVKNPCPKCDASFQDRDEMLGHLTKHFLGQVTKEYVCGVCKKFYPHPDLLQRHLLDSHAHHLYRCALCRDTFDSRVAIQVHFAVKHSQECRIYRCNVCPTTNNENSPGNSPGGANRNLFRSEAEMASHVRAVHAPPATVIDSPMMPRSPATTPSTLQNANLRCVFCGVCCASDLELQLHLANHSASLYRCPICREGFAVEFLLDKHMQSHHLASLPATGQNHNQRENGRGINVRIHTGDDSGRNQKRGRSPANSNNNSVSQRDNNNKRPNYGSGVQNCELCERGEFANDAELQAHKKLVHTPPKTQNKSLATLSLTCAYCGEICRSRTELESHTRIQHASNEPGGRHKCNICDEVCPSGSNLAEHKLQKHCKILLSDTCVVCRGILNSENQFLEHVQRHSLENLDPQQRVDNSLPHLPSPCVICRQTLISDLECRLHARYHLRATSSQNSSPNLSRKSPNPSCCLCLREFPAEDFVSLPSNPVSGGSQSLQVCKSCYVRHTQGLPILHSPYEHVRHGTKEDRIWDPSKDKWESKSRPKDFSTVQLEPKATVTEDEIQRCEDCGVKFEHIEELETHRAQEHSQREDSQPKTYTCIQCQISFATESEIQKHVRKEHLESAGKSCDALRCHLCLMDTSSPLQLQAHLIEHSFAGCSALSCYICQALFTTPIGLQNHMLQQHGLGARPYDCNLCNLKFFFRAELDHHVVTSHRAGRDSISPRESQLPSTTVQAIKSFESDDNTKENDDQRTLHEVRVKDEIIAVNEEEDINVDEQEDEAQDRNQTEDENRELERDEEFKEAKIEAKKEAEETPEKGES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01200406;
90% Identity
iTF_01413641;
80% Identity
-