Mann012394.1
Basic Information
- Insect
- Macrophya annulata
- Gene Symbol
- -
- Assembly
- GCA_963924015.1
- Location
- OZ001259.1:24932325-24935348[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 2.3 9.5 0.0 1 23 300 322 300 322 0.96 2 12 5.3 5.5e+02 2.0 0.2 2 21 323 343 322 344 0.86 3 12 1.4e-06 0.00014 22.7 1.5 3 23 390 410 389 410 0.98 4 12 3.3e-05 0.0034 18.4 0.2 1 23 416 438 416 438 0.98 5 12 0.0002 0.021 15.9 2.6 1 23 444 466 444 466 0.99 6 12 8.1e-06 0.00084 20.3 1.3 1 23 472 494 472 494 0.98 7 12 0.00025 0.026 15.6 1.4 1 23 500 522 500 522 0.98 8 12 7e-06 0.00073 20.5 0.6 1 23 530 552 530 552 0.98 9 12 0.00046 0.048 14.8 0.3 1 23 558 580 558 580 0.96 10 12 3.1e-05 0.0033 18.4 1.1 1 23 586 608 586 608 0.98 11 12 2.4e-05 0.0025 18.8 0.6 1 23 614 636 614 636 0.98 12 12 0.018 1.9 9.7 5.5 1 23 642 664 642 665 0.95
Sequence Information
- Coding Sequence
- atggcCGTTGTGGAAGAATTCAGCGAACTTTGCCGGCTATGTGCTGCTAAAACAAGCCTGCTTTTAGGACTACCGATATTCGAGACTGAGGGTGAGATGCGGCATATCGACGAAAAGATTTCAGCATGTCTACCTGTACagGTATCTATGACAGACAAACTTCCAAAGATGGTGTGCGAAGAGTGCGCCTATAAACTTGACCAGCTTGATGACTTTAGAGAAAAGTGCCTAAGGACTGAGAGAATGTTTATCGCCATGCTTAAAGGACTCGATGTTGAGGACGTAGTTGATTTTAAAGAAGACTGTGACAACGCTGAACAAATTCAGGCAATGAGAGTAATGGATGATATGGATCTTGCTGGCGGAGAGCAAGTTGTTACTCAAGAAGAAATTTGCCAGCAGGGTGGGGATATCCAAGTTGCTGGTATCGAATTGGACGGCGATACGGTGAGAATGGTCGATCAACACATGCGGGAGATGCAGGACGAGgTCTCTAGTCAACAGATAACAATGCATCTTGAGGGCGACGTTACTGTGGTGAGCAATTTAACTGTGGGAACTGATCTCAGTCAGCTCGATATAAACTACGTTACTTCAATTAGTCCGGAGAGTCAAGACTGTCAAGAAGGGTCTCAAATGAAACAGGAGGGCGAAAATGGTGTTCACCAACAAGACAGCGAAAGCGAGAGTGAAGTAGAAGAGTCAGGAGTGAGTGAAGAGGACATGGCACGAACCGAAGATCCTCTGCGTTCAGGAGCAGTGCCCTCAACAAGTGGAAGAAATACTATGAACACTGTGAGCAACGAAACTACCGTAGAATATACAAAATCGGCAAAATCATCGCTGCTTGAAGCGACTCTTTCTAATCCAAGTATAGACGAGGCAGGTAACAGTTGGTACGTTTGTCGTTTATGCAACGAGGCCTCAACAGAACCGTCTAGTCTCGCGGAACATTTTGAAGTACATTTCTGTAGCTGCGCGTGCGGGATTTATTACACTAGCGTAGAGGCTTTGAATATCCACAAGCAACACTGTCAGACTGTTAAAAATAAGGAGGTGAACTCTCCGTGTTCAGGAAGTGAAAATTGCGAGGGAATAGTATTGGCAAATCAGGATGATAACAAGAAGTCTGGTACAACTGCAAGACAGAAATGGACGCCTAAGATTTGCACGGAATGCGGTAAACAGTATAGAACAAATTATAAACTTCAGGAACATATGCGAAAACATACGGGAGAAAAACCATTTCAATGTTTATTATGCGACAAGGCTTTTAGGAGCAAAATAGGACTTGCTCAACACACTGCTACACATACTGGACAATTTGATTACACGTGTTCAACTTGCGGTAAAGGGTTTCAGTGCAAAAGCTATCTGATAGTTCACCAAAGAGTACACTCTGATCTAAAACCCTATCCTTGTAGTACTTGcggtcaaaattttaaaacaaaacagtCGCTTTTAGATCATCAGAATAGACATCTTGGCGTTAAACCATACATGTGCGAGGTTTGCGGTAAGGGATTCATAACAAAAGGCTTATGCAAGAGTCATCAGAAAATACATTCGGGTAAAGATAATCGTCAATATCCTTGCATGGTATGTAATAAGTTATTCGTTAGTAAAAGCTACCTAAATACTCATCTGAGAATACATACAGGTGAAAAACCTTATAAATGTGAAGTTTGTGGCAAAGGTTTTCTAACAAGAGTTGATCTAAAGATTCATTCTACCATGCATACAGGCGAGAAAAGTTTCGTTTGCGAAATGTGCGGAAAAGCTTTTGCACGACGTGCAGCATTGAGATGTCATAGACGTTCTCACACCGGGGAGAGACCCTATAGATGTGACGTTTGCGGTAAAACTTTTACACAGTTTAGTCCTATGGCGATACACAAAAGACTTCACACTGGCGAACGACCGTATGAATGCGATATTTGTAGGAAAGCTTTTGTCTCTAGATCTACGATGATGTGTCATCGCAAAAAACACCATTTACCTTCAGCTACTGATCAGAAAGACGACGTGACTGGACAAgtacttgaaataatttcaacagaaATCGTTCTCAGAGGGTCTCATGATGGTATACAAATTACAGCCGATTGA
- Protein Sequence
- MAVVEEFSELCRLCAAKTSLLLGLPIFETEGEMRHIDEKISACLPVQVSMTDKLPKMVCEECAYKLDQLDDFREKCLRTERMFIAMLKGLDVEDVVDFKEDCDNAEQIQAMRVMDDMDLAGGEQVVTQEEICQQGGDIQVAGIELDGDTVRMVDQHMREMQDEVSSQQITMHLEGDVTVVSNLTVGTDLSQLDINYVTSISPESQDCQEGSQMKQEGENGVHQQDSESESEVEESGVSEEDMARTEDPLRSGAVPSTSGRNTMNTVSNETTVEYTKSAKSSLLEATLSNPSIDEAGNSWYVCRLCNEASTEPSSLAEHFEVHFCSCACGIYYTSVEALNIHKQHCQTVKNKEVNSPCSGSENCEGIVLANQDDNKKSGTTARQKWTPKICTECGKQYRTNYKLQEHMRKHTGEKPFQCLLCDKAFRSKIGLAQHTATHTGQFDYTCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEVCGKGFITKGLCKSHQKIHSGKDNRQYPCMVCNKLFVSKSYLNTHLRIHTGEKPYKCEVCGKGFLTRVDLKIHSTMHTGEKSFVCEMCGKAFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDICRKAFVSRSTMMCHRKKHHLPSATDQKDDVTGQVLEIISTEIVLRGSHDGIQITAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00060553;
- 90% Identity
- iTF_00938955;
- 80% Identity
- -