Mann021038.2
Basic Information
- Insect
- Macrophya annulata
- Gene Symbol
- ZNF280A
- Assembly
- GCA_963924015.1
- Location
- OZ001262.1:7903069-7907011[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.34 36 5.7 1.7 1 23 58 81 58 81 0.92 2 16 5e-05 0.0052 17.8 1.4 1 23 114 136 114 136 0.98 3 16 1.7e-05 0.0018 19.3 1.4 1 23 142 165 142 165 0.97 4 16 1.8e-06 0.00019 22.4 0.4 1 23 171 193 171 193 0.98 5 16 7.4e-07 7.6e-05 23.6 1.8 1 23 199 221 199 221 0.97 6 16 5.7e-05 0.0059 17.6 0.7 1 23 227 249 227 249 0.98 7 16 0.00021 0.022 15.9 4.0 1 23 255 277 255 277 0.96 8 16 0.0058 0.6 11.3 0.0 1 23 415 437 415 437 0.97 9 16 0.0021 0.22 12.7 1.7 1 23 443 466 443 466 0.93 10 16 0.24 25 6.2 0.1 2 23 469 491 468 491 0.90 11 16 1.7e-07 1.8e-05 25.6 1.3 2 23 498 519 497 519 0.96 12 16 4.1e-05 0.0043 18.1 1.0 1 23 525 548 525 548 0.95 13 16 6.1e-05 0.0063 17.5 1.0 1 23 554 576 554 576 0.95 14 16 4.1e-05 0.0042 18.1 0.7 1 23 582 604 582 604 0.96 15 16 1.5e-07 1.5e-05 25.8 1.3 1 23 610 632 610 632 0.98 16 16 0.00019 0.02 16.0 0.3 1 23 638 660 638 660 0.95
Sequence Information
- Coding Sequence
- ATGAAATGCGAAAAGACATATTCAGAATCTGAATTAGTcacagaaaatttatcaaccGGAGTTGAAGAGTTTCCTGAAAGAGCAGAAGATGCAAGGGAAGAGGTGAAAGCTAACAAATTGGAAATTGATTGGGATTTAGGtaaaaagaaacgaagaaataaGTTCAAGTCTCATCCTTGCATGCACTGCAATTACTCGGCTAATAAAAAGAGATTACTTGATGCCCATTATTTAGAAGTTCATCGAGAAATTTCGCGAAaaaaacagatgaaaaaatcaagaagTATAGACAAGGACACGATCAAACAAGCACGTGTCGAAGTTGACGGGAAGGTTTACTACCATTGCAACGATTGTGGGAAAAATCTTTATTCTCCTTACACATTTTCATGGCATATTAGAATTCATACGGGTGAAAGACCCTACACCTGCCATCTGTGCGGTCGTCAATTCCGGGTTAATCAAGGCTTGGCAAGACATTTGCGGGAAACACATGCAGGCATTAAAAAGTTCCCATGCGATATATGTGGAAGAATGTTTTCCACTAAACGTAACGCCCAAGATCATCGCCGTATTCACACGGGGGAGAGACCTTTTGCATGTAAAACATGCGGCAAATCCTTTAAACAAAAGGCATCGCTGTTTGTTCACAACCGTACTCACACAGACTTCTTTCCATTCAAATGCAATTATTGTAATCAAGGCTTTCGCACCAGACCTCCGTTAATGGTTCACATTACAAAACACACTGGTGAAAAACCCCATGCCTGTGATATATGTAATCGTCATTTTCGCATTAAATATGAACTGAAGAGACATCGGCTTGTACATTTTGAGGAAAAACCTTGGCTTTGTACTGACTGTGGACTTTCGTGTTTGCTGAAGGAAGATGAAATCACGGCTTCTATTCCCAAGACTATTGACAACGAAATTATTGACGAAGAGGAACAATTTTCGTATGGGGATACTATAGACGTGACAGTAATGTATTCTAAAGAGCAAGATGGTAAACAATTTGAAGAAGATTCATTTGTTCTAATGATACCACAGAATAAACCAGACAATCCTGATGCACGTGCCTATGGATGCCGTACTTGCAATGTTTACAATTTAATGTTTGGCGAATTTTCCGCCCATGTCAGCAGGCATTCATCAGACAATGGGGATTGCGGTGAAGAATATGAAAGCCAGGAAGCTTTGCATGCTGCAGTTGCTCATTCACTTAGATCAACTTTGGACAATTTTAGTTGTGAAATTTGTGGTAGTAAAAGCAATTCACAGGCCGCATTGCTAGAGCATTTGGAAATCCATACACAAGAAGAAACTCATAAGTGTGACCTTTGTGGTATCTGTTTTGATGCTTTAACAAATCTTCAGTCTCACGTTTCTCTTCAACACTCTATCCCTTGTCAAGATTGTAATCTACGATTTGATACAGACCAGATACTTCAAGATCATATCAAAGATACTCATTTGGACAAGGTATTGATCTCATGCGAAACATGCGGGAAGGTGTTTCCTAACAAATCCAGCTTACGGCATCACATGATTAGACACAGCAACGACCAACCATACGTTTGTAAAACTTGTAATCGAGCATTCAAACGTACATCTAGTTTGTACATGCATGAGAGAGCCGTTCACCAAAAgattaaatcatttttgtgcgttatttgtaataaaaaattcgcattAAAAACACAAATGCAGACACACATGAGGGTCCATACCGGAGAAAGACCTTACGCCTGTGACATATGCACTCAAACATTCAAGACTACTAGCCAGCTACAACTGCACAAAGACGTTCACTTCGATAATAGACCTTTTCCTTGTGAATATTGTAATAAGAAATTTCGAAGAAGGCCTAATTTAATACTTCATCTTAGAACTCACACAGGTGAAAAACCATATTTGTGCGATTTGTGCGGTCGTGGATTTGCACAACGTGGAGATATGAGGAAACACAAAGTCACGCATTATAAACTAAAAACACCTGCTAATCCTCGCGGATATTGTCACTCCAGTGTATCTTAG
- Protein Sequence
- MKCEKTYSESELVTENLSTGVEEFPERAEDAREEVKANKLEIDWDLGKKKRRNKFKSHPCMHCNYSANKKRLLDAHYLEVHREISRKKQMKKSRSIDKDTIKQARVEVDGKVYYHCNDCGKNLYSPYTFSWHIRIHTGERPYTCHLCGRQFRVNQGLARHLRETHAGIKKFPCDICGRMFSTKRNAQDHRRIHTGERPFACKTCGKSFKQKASLFVHNRTHTDFFPFKCNYCNQGFRTRPPLMVHITKHTGEKPHACDICNRHFRIKYELKRHRLVHFEEKPWLCTDCGLSCLLKEDEITASIPKTIDNEIIDEEEQFSYGDTIDVTVMYSKEQDGKQFEEDSFVLMIPQNKPDNPDARAYGCRTCNVYNLMFGEFSAHVSRHSSDNGDCGEEYESQEALHAAVAHSLRSTLDNFSCEICGSKSNSQAALLEHLEIHTQEETHKCDLCGICFDALTNLQSHVSLQHSIPCQDCNLRFDTDQILQDHIKDTHLDKVLISCETCGKVFPNKSSLRHHMIRHSNDQPYVCKTCNRAFKRTSSLYMHERAVHQKIKSFLCVICNKKFALKTQMQTHMRVHTGERPYACDICTQTFKTTSQLQLHKDVHFDNRPFPCEYCNKKFRRRPNLILHLRTHTGEKPYLCDLCGRGFAQRGDMRKHKVTHYKLKTPANPRGYCHSSVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -