Basic Information

Gene Symbol
znf711
Assembly
GCA_963924015.1
Location
OZ001259.1:24535257-24537443[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.093 9.7 7.5 1.4 3 23 3 24 1 24 0.92
2 19 0.00053 0.055 14.6 2.2 1 23 30 52 30 52 0.97
3 19 5 5.2e+02 2.1 0.0 2 23 57 78 56 78 0.87
4 19 0.044 4.5 8.6 1.7 3 23 86 107 85 107 0.91
5 19 2e-06 0.00021 22.2 2.8 1 23 113 135 113 135 0.98
6 19 0.0076 0.79 10.9 1.0 1 23 141 163 141 163 0.99
7 19 6.8e-06 0.00071 20.5 2.4 2 23 170 191 169 191 0.97
8 19 9.9e-05 0.01 16.9 2.5 1 23 197 219 197 219 0.97
9 19 8.3e-06 0.00086 20.3 0.3 1 21 225 245 225 246 0.95
10 19 0.00063 0.065 14.4 1.3 2 23 342 363 341 363 0.96
11 19 9.3e-07 9.7e-05 23.2 2.2 1 23 369 391 369 391 0.98
12 19 0.0002 0.021 15.9 0.9 1 23 397 419 397 419 0.98
13 19 0.012 1.2 10.3 1.4 3 23 427 448 425 448 0.91
14 19 9.1e-05 0.0095 17.0 1.3 1 23 453 475 453 475 0.97
15 19 1.4e-06 0.00014 22.7 1.9 1 23 485 507 485 507 0.98
16 19 6.9e-07 7.2e-05 23.7 0.6 1 23 513 535 513 535 0.98
17 19 8.4e-06 0.00088 20.2 1.3 2 23 542 563 541 563 0.97
18 19 3.5e-05 0.0037 18.3 4.8 1 23 569 591 569 591 0.98
19 19 5.1e-05 0.0053 17.8 0.4 1 21 597 617 597 618 0.96

Sequence Information

Coding Sequence
ATGGCCTGCAGTGTTTGTCACAAGTGGTTCAGGTACAGAGACAAGCTCGAGCTTCATAGCAGTTCTATGCACATAAAGGACAGACCGTTTTCTTGCCTGATTTGCGAGAAATCATACAAAACTAAATCTATATTACAAAAGCATAGCAAGTCTCATGGGAAGCAGGTCGTTTGTTACATATGCGGTGGAGTGGAGGAGTCTCAGTTGACTTTAGAAGCGCATTTGGAGAAGCACGACAAAGAGTTTAACGTGTTTTGCATGACATGCAACAAGGGGTTTTACACTAAGAAAAAATTGGACGTACATACAACTCAGGAACACGTCGGTGACGAACCGTTCAAGTGTACAATTTGCGGCAAGACATTTGCCAGTCGTACTTATCTAAAATTgcacaaaaaaaatcacgaagaACCGGCCAGATACAAATGTTCAATTTGCACTTTTGAGAGTACGTGGAAGAACTCGTTAAGAGTACACATGAAGATACATTCTGGGGAGAATCTAATGACTTGTGAAGTTTGCGGCAAATGTTTGTCGACAAAGACGTCCTTTGAAACCCACATGAGGATACATACGGGTGAAAAACCTCACGTTTGCGAAGTTTGCGGCAAAGCATTTAGTGCTAGGAAatatttacacatacataatcgAACTCACACAGGGGAGAAACCTTACGCCTGTGAAATATGCCCAAAACGTTTCACCCAGAAAGGCTCAATGAAGCTACACATGAAaTCGAACAAACCCAAAGAGAAGCCACCGGCCGAGCAAGAAGGACATTCCAAACCAGAGATCTCATCAAAGGAAGGTCTTTCGAAATCCGATGACTGTAAGACAGTTGGTAAAAAAACTGGTGAcaatattgagaaaaatggTAGAATTTTGGTGATCGTCGACTCGCTTGTGGAAGATAACAACGCCGTAGCCCGACCCGCTAAATTGCGCGACGAGGATCCGCTGCTTGTTGAAAACGAGACAAAGTCCATTTCATTAATTGACGCTCAGTTGGCCGACAAGGAATGGAAATGCAACAATTGCGATAGGATATGCGGAAATAGAGAACTGCTACGTAAACATCAAGTGGTACACAGCAGGGAGTTTAAATACAGCTgtaatatttgtgaaaaaaagtttaagaGGTCTAGCGAGCTCAAGGTACACAGTAAAAGTCATTCTAAAGAAAAGAACTTTATCTGCGATATTTGCTCCAGTGCTTTTAAGCTGAAATCGCAATTGACTATACATACTAAACGGCACAATAACAAGCATGATATTATATGCGATCTTTGCAAGAAGGGTTTTCACACCAACGGCGATTACAAATCTCACAAACTTGCCAAACACGGTCTGAGCGGACACGTTTGTTCAACTTGCGGCAAAGCTTTCAGATCTGAAAGCATACTAAACAAACATTCTAGGATACATCAGCCTAATTACGAACCGGAAAGACCCCATCAGTGTGAAATGTGCGGCAAGATGTTTGCCActaaaaaatcgttgaaaatacACGGCAATACCCATACGGGGGAGAGAAGCTATTCTTGCGATCAGTGCGGAAAAACTGTAAGGACTAGAGCCTCTCTCAGAGATCACATGCGCCTTCACACTGGACAGAAGCCAGTTGTTTGTCGTTATTGCAAAAAGGGATTTACCAAGAGATCGACAATGACTGTACACATGAGGATACATACGGGCGAAAGACCCCACAAGTGTGATACCTGCCAAAAAACATTCACCCAAAGAACTAGCCTCGTTATACACAGGAGATACCATACAGGAGAAAGACCTTACCAATGCCAGACTTGCTCTAAAGGATTTGTTTCATCTGCTCAGCTAAAATTACATCAAAATTCTTGTTGTTGA
Protein Sequence
MACSVCHKWFRYRDKLELHSSSMHIKDRPFSCLICEKSYKTKSILQKHSKSHGKQVVCYICGGVEESQLTLEAHLEKHDKEFNVFCMTCNKGFYTKKKLDVHTTQEHVGDEPFKCTICGKTFASRTYLKLHKKNHEEPARYKCSICTFESTWKNSLRVHMKIHSGENLMTCEVCGKCLSTKTSFETHMRIHTGEKPHVCEVCGKAFSARKYLHIHNRTHTGEKPYACEICPKRFTQKGSMKLHMKSNKPKEKPPAEQEGHSKPEISSKEGLSKSDDCKTVGKKTGDNIEKNGRILVIVDSLVEDNNAVARPAKLRDEDPLLVENETKSISLIDAQLADKEWKCNNCDRICGNRELLRKHQVVHSREFKYSCNICEKKFKRSSELKVHSKSHSKEKNFICDICSSAFKLKSQLTIHTKRHNNKHDIICDLCKKGFHTNGDYKSHKLAKHGLSGHVCSTCGKAFRSESILNKHSRIHQPNYEPERPHQCEMCGKMFATKKSLKIHGNTHTGERSYSCDQCGKTVRTRASLRDHMRLHTGQKPVVCRYCKKGFTKRSTMTVHMRIHTGERPHKCDTCQKTFTQRTSLVIHRRYHTGERPYQCQTCSKGFVSSAQLKLHQNSCC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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