Basic Information

Gene Symbol
-
Assembly
GCA_949628255.1
Location
OX451210.1:16103009-16110691[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.05 6.3 8.3 0.1 3 23 1139 1159 1137 1159 0.93
2 14 2.6e-05 0.0033 18.6 0.6 3 23 1202 1223 1200 1223 0.96
3 14 0.44 55 5.4 3.0 2 23 1248 1269 1247 1269 0.97
4 14 0.99 1.3e+02 4.2 4.6 3 21 1362 1380 1360 1381 0.93
5 14 0.014 1.8 10.0 1.4 1 21 1496 1516 1496 1517 0.94
6 14 0.0029 0.37 12.2 0.1 2 23 1542 1563 1541 1563 0.94
7 14 0.48 61 5.2 1.0 1 23 1655 1677 1655 1677 0.96
8 14 0.018 2.3 9.7 0.5 1 23 1704 1726 1704 1726 0.97
9 14 0.0023 0.29 12.5 1.9 1 23 1827 1850 1827 1850 0.97
10 14 0.98 1.2e+02 4.3 1.5 2 23 1911 1934 1910 1934 0.93
11 14 4.5 5.7e+02 2.2 5.1 1 23 2407 2431 2407 2431 0.93
12 14 0.00028 0.035 15.4 5.6 1 23 2452 2475 2452 2475 0.93
13 14 0.08 10 7.7 0.2 1 23 2493 2516 2493 2516 0.96
14 14 0.0012 0.15 13.4 0.4 1 23 2533 2555 2533 2555 0.99

Sequence Information

Coding Sequence
ATGGAATCTTCCAGGAACAGGAATGAGGATCGAAATTATGAAATCCGTTATAACTTTAAAGCAAACAGTAATCGTGGCAGCTCAAGCGCGTTTAATCCTGACCAGAAATTGCAGTATTTTACAAACAACGGAATAATTGATGACGAAGATGTGTCCGATGGAAATACTTGTAACTCTCCTCATGATAGCGAAACTAAAATATTTTACGACAATTCGAATTTAAACTATGATTCCGATGCAACAAGTCATTTGACTTTTGATTCGAAGCAATTAGACGATGAAAGTCACAGTAAATATAACAACCATCCGGATACGACATCATGTAAACCATGTTCTGTGATATTAAAACGTTTATCCGATGAGGAATTGCGCAATGCATTGTCCAGGAATAATTTAGGTGTAAAAAATGTTAGGATAAATTATCGGAGAAATAAGCTTTCCGGATCATGTCAACTTAATAAGAGAGAAAGGAATGGAAGATTTTTGTCTTCTAAAAACTTGAAAGATCATCCTAATTCAAAGAAGACTGACTGCAAAGTAGTGGACAATGTTAGAACTCGAAAGAAACTGAATAGAGTTGAAAGTACCAGTTCTTCGGACAAAACCATTCAATCTGACAATGAATCTAACGGCAGCtattttaatgaaagaattaataaacctTATTCTTCGCTTGATGATGACAAAGCTGGCTCCGACAATTCTAATACTATTGAACATTTTAACAAACATGAAAGCAGTGGTATTAGTACAGAGAATTCTGAGAGAAAAGTATCCCTGTCAAAGCGCACGAGCCTTTCGCGAAAAAAGactaaaattattgataagGAAGAAGATGAGAATTGCAGGCAATATCCTGGCACTGGAATATTGAAAAGTGATAATTCAAAGAAATCCAAAGACACTGGTATTAATTCTGAAGTTTCTGAAAGAACAATATCATCCCTGAGAAGGCTGAGAAGGgtatcgaatgaaaaaattgctaGTACCAAAGAGCCTGAATCTTGTAGACAAGATCATTGTAATGAAACATTGCAACATGAAGACTTAAAAGAAATTCAAGGCAGTAGGATTAGCTCGGACGATTCTGAGATTAAAGTATTATCAAACAAATGTTTCAATCTTTCACTAAAACGTAAAAGAAAGActctcaaaaaaaatgaagatcgtAGACAAGATCATCACCGTCCCAGCACAAGCACGCAGCTAGAAGATTCTGATAAAAGCAACGTGAATCATCTTAAACGTTCTATCAAGAGAAAACTCTCTGATACCGAAGACACTGCATCACCTATTTTGAAACTCAACAAATTTGAAGAGAAACATACTTCGATGGATTCGGATTGCAGCGAAGAAAATGATCGAGATCCACTTCGCCATCAAGCCACCGCATCTAGACATTGGGATGAAAAAGACGCACTGAAAGAACCACAAGTAGTCGGTAATAAAAATGGCAGAGAAAAGGTAAGCTACAAAGTTCAAAATAAAGCGCCAAtagttaaaaatttgagagtttcacttgaaaaaatgaaaggcaTGGCACATCCAAGTACATCCAAACAAGGTAATAATGGTAAGTTAACTTTAAATCGTTGCATAGATACGTACGAGCCAGATGTTGATTTTGAAGCAGATTTTTCCGATACAAAGAAGGAAGATCCAAGTAAAAATGGTTTTGATAAAAGTAGAAATACCAAAATTACAGATTACTTttttaaaatcgataaaaGCAGAGTTGTATCGGAAAATAATAAGAGTAAATGCGATCAAATCGGCAACGATTTAatgttaaaaaagaaacatgGTATTTGTAAAGCCGCAATCGTGTCATTGATTgatttcaaaaagttgaaaataccAGGTTCGGGATATTCTGCTtccgaaattgaaaaatcaactcAGGAATACGCcaacttttttattattaacaattttactACCCCAACTGCGAATCAAAACGTAACAGTCCCTTctagtaataatttttcatctagCTTAAacgaattatcaataaatgatGAACAGTCTTCcactaattttgaaaatgatttttcaccTAATAGTCGACAAAATCTAACGAATAATGAACAATCATCAACTGATTTTCCAAATTTGTTGTCGGTCCATCACGTGGAAGTACTTTCTAGTGATTCATTACAAACTCATAAAGTTTCAACGGGAAATAACTTATCGCCCTGCATAAGTCACAGATCTCCGCAATTAAAAAGACTAAAGCCAGCTGCTAAATCCCAATCCTCACTTAAAAATGCggaaaaatccgaaaatcatTCTTCAGAAACTCGGGATAAAAACACTACGCCAAAATCAATAAAGTCTGCGAATTCGTTGTCAAAGAAAGATCTTTCGACGGGAAAGAGTACCGTCTTGATCAACGATAAAATGGAATCAAACGAATCTCAAGTATCCGCGACAAAAAAACATGACGACACACCACGCACGGATTATTTTGAAGTATTGCTCGGTGATAACGAACTACGAAATGCACCAAATGAAAACTCAGTACCAGACGAGGGTTCAAATACTGTCATAGATCGGTCAGATACACATCCAGCTCCTGTATCTGTAATAATATCTCCGGTAAAATTGGCAACTccaagaaattatttgaaacaggAGATTCCACGGCATATTCCGGCAAATAGCATGACATTTATAAGCCGTGAGATTATGGAAGAAAATAGTTCTTGGCTAGGGTTGGATAACATCATTGGAAACGCGACCGAAATCGGCACAACAGCGACAACAGATGATACCATAGGCGAAAATGAGACCTCGGACGTTATTCCCATCATGAATACAACGAAAGATAAAACAGTAACATCCCCGAAAGTTGGAAATGGCAGTCCTGTTGGTATGgcagaaaatttgaaagatgcAAACTTGAGCAGTAGTGACAGAGGTTCAACAGAATCTCGAGACagcaataaatatttgataaaattactCAACTCAAAAAGCGGAGAGTGTCCTTCAAAACAATCCGGTGATACAGAAATCGGAACTTGCTTAAGTGAAAAGAACGCATTGACTGTGAGTAAAATGGTAGAGAAAAAACTTGATGGTGTAAAGCGCAGTGATACAGTTTTAGAAGAACCAACGAGTACGTTAATGATTACAAATTTGATATCATTAAAACCCGTTGAAGAATCTAGCGGACCGATTCCGGTTGAGTCTAATAATCAAGATCGTGAGAACTCAAACTGTCAAGATGAGCGTCCAACGGATTCGAAGGAAGACGGACAATTGTTTATAGACACTGATGATAGTGACTCGAATCCTGAACCGGTAGGAGACGTAACGCCAGGTACATCGTCTCCGAACGGTTCTGCTTGTAGCACAATTCTACAGGATGAAGAAACCGGCAAAACTACAGAAGAATCATCGAACCTAGAATGCATCATTTGCAAGAAGCCATATAGAAACATTAGAGGATTAGAGCAACATTTGAAGGTGCATATAAGACGTACGGAAGGTTGCTGTCTCATCTGTGATAAACCgcttaataaaaaaaatcaaaatgcgATAAAACATTATCTTGAACATTGCGGGTACTCAGAAGATGATCAAAGGGATTCTCTCGCATGTGAAGTTTGTAACGCAAAATTTAACAGAAGATCTGGTCTCACAAATCATATGAGGATGAAACAcaatgttggaaaaaataaatctagattgaaaatagaaaatctagTGCGAAAAGcgaaaatgaataatcataACAAATGTGACGTTTGTCAATTGACTTGCGACACTGAAGAAGACTTGCACTCGCATGTGTACAAACACACGGAACAAGAATTGCAGGATGCTTTCAAAGCTGCAATGGCTAAAATACATATCCCGTCAAATAGCACTGAGGTTCGTGAAAATCTAGAGAACGGCACTccggagaaagaaaaaactaataatGAAGAACAGCTGACATCTGAATCGACAGAGACTACTAATACTTCGCCGAAATCACCTCCGGctattcagaattttgaagtATCCATTTGTATGTGTCACAAAGATGAGAGATTAGAAATATCTGGGggaattttaattgaaattgcaCTAGCTTGCGTACAGtgcaaaacatttttcaaatcgagaagatgtttgaaaaatcattacAATCACACCTCGTGCAAGTTGAGGGATAACACCTTAGTTGTACCTAAAATGTTTTGCAGTAAATGTTGCGTGATTTTAAATAATCTAGAGGAGATGCACATGCATGTGGCAAAGCATGGCGAACTTGACGTTGGCCTGAATACATCGTTACTTTGCAAACATTGCAATATGTTTTTCTTCAGTATTGGAtcttcgttttattcacaCTGGTCCAATCACCGGGACAACCCACTTTATATAGCTCATCATTATACGGTTCCGAACGAAATGAAAGTGAAGATTGTAGAAACTGGAAACCCGGAATCTGTCGACGAAGATGAACCCACGGAAAGTCTTCTAATAGCGGATCATCAATGCCACAATTGTAAAATACCATTTCAAACTGAAAACGACCTTAAACAACAcgttaattcaaaaattgcatGCTCTAAAAAAGTTGCTCCTGAATctgaaatcgttgaaaataccAAATCGGTTTTTAATCTAATTTGCAGCATATGTAACAAAGAATTTGTAGACAAGGCGACGTTCGATGTTCACATCGAGGAACACGATACCATAAAAGGTTTTCTTCAAGCACCGAAGGACTTGGAGAAATCATCAGGAAATAATCCACTTACTTGCAGTATTTGTAGAACCGAACACGAGACGATATCCGATTACAAAGAACATTTGATTAGACATGAagtaattcaagaaaaatttctttgcaATTACTGCAATCTGATGATGGATAGTGTAGAAGACTTTGAACATCATTCTGCGGAACATAAAGGCACGCCAGAGAAACCACTTGCATGTAAAGTTATATTCGCTACAGCTAAATTTCACTGCAAACCTTGTAAAATACGGTTCGATAGTCAATCCGTATTGGATGAGCACCTGGCAACACATAAAACTTTACCTGTCGCAAGTCCTAAAACAgttgaaaatccgacaaccAAAATCGTGCCGGATATCGATCTTGAATGTCACGTTTGTGAAACGTGCCAAGAAAAGTTTGATGATCAACTCAAATTAGATGCCCATGTTTTGACGCACAAAAAAGTTTCCTCGGACAAATCGACTGTAGTAGATCCTGTTCTAGTTCACCTGTCCGATGATTCGAATTCTGctgatattgaaataattgatatgGAAACGAATGTGGAAACGAATGTGGAAACGAATGTGGAAACGAATGTGGAAACGAATGTGGAAACGAATGTGAAAACGAATGTGGAAAATGTAAAGCCCGTTGTAGAGAATACTTTGCTCGAAGGAGAACAGGGAAAAGCTAATCAACAAGAGAATAAAAGGCCAGCATTCCTACgtgttaaaaatttggaagaattaTTACCATACGCTTGTAGCAAGTGCAAATCGGAGTTTGACACGCAAATAAATCTCAACAAACATGTCTGTACAGCACACGTTGACTCTacccaaaataaaaaatttaaatactcTTGTACAATTTGCAAGAACTATCAAAGCGACAATGATTCTGATTGGAACCTACACGTATTGACACACTTCCCGGTTCGAAGTTCTCAAAAGTTGAGTGATAATTGGTACTATGTATTGAAAATGCGATCTGGTCAAACTATTCTTAAATGCAAGATTTGTCCGATCTATGAATGTTCGACTTTCAGCTCGCTGcagaatcattttttaatcagtCATCGAGATATTTATCATCCAATATTCAAATGCAGGGTTTGTCGTACTTTCAAATCTGAATTGGAAGAAGAAATTCGTCGACACGAAGCTGCTCATTTTGAAAATCCATCTTCATATCAACAGCTAGCCAGATTGATTGAGCATTTAGCGACTGCTCAACCAGTTCAATTTCCCAACAACTGCAGTCAACAACCACTTTCGATTCCATCCCTGACCAGCACCGGAActgatatatctatacttcaacaagtggaaaatttcaacatttctcAACGACTACATTCGATAATAGTAGCGTCACTTCAGTCAGCTGAGAAGCCAAATAACTTTCCACGCCAAGGGCTGAATCCGTCTGTAACTAGATCGGGTAATAATTTACCATTACTTCGACCACTGCCAAATATTATCAACCGTTCTCAACGTCCGGACCGAACGCTCCGaccagaaaataattctaataacTATAATCAACAATCAGTATCAATTCCACCTGCGACTAGCTTGGgctataatttttcgaaacttcaaGTATCTGACACTGCAACTAACTTTCAACAACCagtctcaaattcatctgcGACTAGCTCGGTCAACAATTCATCCTCGAATCAATCTGCAGTGCAAAATTTCGACAATTCTCAACAACTCGATCCGACAAGCGAATCGGATAATAATTCCAACGACATTCAACAAATAATTACAGTGCCATCAGTGACAAATTCAAATAGTAAGCAACCGCCACTCCAATCTGTTGACAATTCTAACGCCGTTCGATACGCAGTTTGGATTCCACCCATGGCTAGTTCCGGCAATAATTCATCATCGCTTCAACCATCGCAAATTTCTAACAACCCTCAACAGTCCGTTTCGAATGCACTAACGCCAAATggtaattgtaataattttcaacaatcaATATCAATTCCATCCGTTACGATATCGGGTAGCAATTTATCGACGATTCAACAAGTCGatatatcaaataaattcCAACATCCGGTTGCGACTACGGCCGACTCTGGCTCAGGCAATAATTTACCCGCGCTTCAACCTGTGCAAGGTGTCGATAATTCCCAACAACCGGGTTCAGCAGTACaaccaaataaaaattccaacaaTTTTCAACAGTCAACTTCAATGCCAACTGCGACCAGCTCGGGGAACAGATTATCCACGAATCAATCAATGGAGAATCCACAATGGTTAGCCGCGACGTcgcaaacttttcaaattcaagtcAACAACGGTGCACCGTTTAACAATATGACAAATGTGATGCACACATTGCCGATGTATGTAACGAATGTTACTTATTGTTGTcggatttgtaaaaattataaatgctCTTCCCAACAAGACTTGAAGGCACACGAAGCTCTGCACGAGTACATTCAACCGAGTGAACCTTCGAAGAGATTATACCGATGCAAAGTGTgcacaaatattttttgtccGACCGAGGATCACTTGAAAATGCATATGGAAGTGTGTCACACAGCCGATAAATCGAACGTATCCCAAAATCAAACGCAATCCGATGCAACTAATAGTCAATTTAAATGCAAACATTGCCATCAGACTTTCGCAACTTCTGTTCAATTGACGCGACACGTATATAACAGTCACCCAATTGCTGGCCCACAACAAAATgataatcaatttcaaaactcGTATCCCCATACCTGTGAAATATGCTCGATCGGTTTTTTAAACGAGGCTTTTTTGCAAGCACACATACGCCAGATACATCCTACCATTAAAATACCACGTCATAATATAAACGATCCGACAACTTTATACCAATGTTCTACTTGCGGTTTATTACTTATATCCCAAGAAACGTTAAATTATCACATGAGATCTCACAGCATAGGATTGCAGTAA
Protein Sequence
MESSRNRNEDRNYEIRYNFKANSNRGSSSAFNPDQKLQYFTNNGIIDDEDVSDGNTCNSPHDSETKIFYDNSNLNYDSDATSHLTFDSKQLDDESHSKYNNHPDTTSCKPCSVILKRLSDEELRNALSRNNLGVKNVRINYRRNKLSGSCQLNKRERNGRFLSSKNLKDHPNSKKTDCKVVDNVRTRKKLNRVESTSSSDKTIQSDNESNGSYFNERINKPYSSLDDDKAGSDNSNTIEHFNKHESSGISTENSERKVSLSKRTSLSRKKTKIIDKEEDENCRQYPGTGILKSDNSKKSKDTGINSEVSERTISSLRRLRRVSNEKIASTKEPESCRQDHCNETLQHEDLKEIQGSRISSDDSEIKVLSNKCFNLSLKRKRKTLKKNEDRRQDHHRPSTSTQLEDSDKSNVNHLKRSIKRKLSDTEDTASPILKLNKFEEKHTSMDSDCSEENDRDPLRHQATASRHWDEKDALKEPQVVGNKNGREKVSYKVQNKAPIVKNLRVSLEKMKGMAHPSTSKQGNNGKLTLNRCIDTYEPDVDFEADFSDTKKEDPSKNGFDKSRNTKITDYFFKIDKSRVVSENNKSKCDQIGNDLMLKKKHGICKAAIVSLIDFKKLKIPGSGYSASEIEKSTQEYANFFIINNFTTPTANQNVTVPSSNNFSSSLNELSINDEQSSTNFENDFSPNSRQNLTNNEQSSTDFPNLLSVHHVEVLSSDSLQTHKVSTGNNLSPCISHRSPQLKRLKPAAKSQSSLKNAEKSENHSSETRDKNTTPKSIKSANSLSKKDLSTGKSTVLINDKMESNESQVSATKKHDDTPRTDYFEVLLGDNELRNAPNENSVPDEGSNTVIDRSDTHPAPVSVIISPVKLATPRNYLKQEIPRHIPANSMTFISREIMEENSSWLGLDNIIGNATEIGTTATTDDTIGENETSDVIPIMNTTKDKTVTSPKVGNGSPVGMAENLKDANLSSSDRGSTESRDSNKYLIKLLNSKSGECPSKQSGDTEIGTCLSEKNALTVSKMVEKKLDGVKRSDTVLEEPTSTLMITNLISLKPVEESSGPIPVESNNQDRENSNCQDERPTDSKEDGQLFIDTDDSDSNPEPVGDVTPGTSSPNGSACSTILQDEETGKTTEESSNLECIICKKPYRNIRGLEQHLKVHIRRTEGCCLICDKPLNKKNQNAIKHYLEHCGYSEDDQRDSLACEVCNAKFNRRSGLTNHMRMKHNVGKNKSRLKIENLVRKAKMNNHNKCDVCQLTCDTEEDLHSHVYKHTEQELQDAFKAAMAKIHIPSNSTEVRENLENGTPEKEKTNNEEQLTSESTETTNTSPKSPPAIQNFEVSICMCHKDERLEISGGILIEIALACVQCKTFFKSRRCLKNHYNHTSCKLRDNTLVVPKMFCSKCCVILNNLEEMHMHVAKHGELDVGLNTSLLCKHCNMFFFSIGSSFYSHWSNHRDNPLYIAHHYTVPNEMKVKIVETGNPESVDEDEPTESLLIADHQCHNCKIPFQTENDLKQHVNSKIACSKKVAPESEIVENTKSVFNLICSICNKEFVDKATFDVHIEEHDTIKGFLQAPKDLEKSSGNNPLTCSICRTEHETISDYKEHLIRHEVIQEKFLCNYCNLMMDSVEDFEHHSAEHKGTPEKPLACKVIFATAKFHCKPCKIRFDSQSVLDEHLATHKTLPVASPKTVENPTTKIVPDIDLECHVCETCQEKFDDQLKLDAHVLTHKKVSSDKSTVVDPVLVHLSDDSNSADIEIIDMETNVETNVETNVETNVETNVETNVKTNVENVKPVVENTLLEGEQGKANQQENKRPAFLRVKNLEELLPYACSKCKSEFDTQINLNKHVCTAHVDSTQNKKFKYSCTICKNYQSDNDSDWNLHVLTHFPVRSSQKLSDNWYYVLKMRSGQTILKCKICPIYECSTFSSLQNHFLISHRDIYHPIFKCRVCRTFKSELEEEIRRHEAAHFENPSSYQQLARLIEHLATAQPVQFPNNCSQQPLSIPSLTSTGTDISILQQVENFNISQRLHSIIVASLQSAEKPNNFPRQGLNPSVTRSGNNLPLLRPLPNIINRSQRPDRTLRPENNSNNYNQQSVSIPPATSLGYNFSKLQVSDTATNFQQPVSNSSATSSVNNSSSNQSAVQNFDNSQQLDPTSESDNNSNDIQQIITVPSVTNSNSKQPPLQSVDNSNAVRYAVWIPPMASSGNNSSSLQPSQISNNPQQSVSNALTPNGNCNNFQQSISIPSVTISGSNLSTIQQVDISNKFQHPVATTADSGSGNNLPALQPVQGVDNSQQPGSAVQPNKNSNNFQQSTSMPTATSSGNRLSTNQSMENPQWLAATSQTFQIQVNNGAPFNNMTNVMHTLPMYVTNVTYCCRICKNYKCSSQQDLKAHEALHEYIQPSEPSKRLYRCKVCTNIFCPTEDHLKMHMEVCHTADKSNVSQNQTQSDATNSQFKCKHCHQTFATSVQLTRHVYNSHPIAGPQQNDNQFQNSYPHTCEICSIGFLNEAFLQAHIRQIHPTIKIPRHNINDPTTLYQCSTCGLLLISQETLNYHMRSHSIGLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-