Malb016209.1
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- -
- Assembly
- GCA_949628255.1
- Location
- OX451208.1:34888166-34891130[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.31 39 5.8 2.8 2 23 298 319 297 319 0.84 2 18 0.1 13 7.3 1.4 1 12 325 336 325 347 0.80 3 18 0.012 1.5 10.3 1.8 1 23 360 382 360 382 0.85 4 18 0.0028 0.35 12.3 1.6 2 23 390 412 389 412 0.96 5 18 8.5e-05 0.011 17.0 1.3 1 23 418 440 418 440 0.98 6 18 0.00057 0.072 14.5 1.5 1 23 446 468 446 468 0.95 7 18 6.1e-07 7.7e-05 23.8 2.0 1 23 474 496 474 496 0.99 8 18 1 1.3e+02 4.2 0.0 2 12 508 518 507 520 0.89 9 18 1.2 1.5e+02 4.0 6.3 1 20 551 570 551 573 0.91 10 18 0.14 18 6.9 0.2 1 23 579 601 579 601 0.94 11 18 0.046 5.8 8.4 1.6 1 21 620 640 620 641 0.93 12 18 0.0012 0.15 13.4 0.1 2 21 649 668 648 669 0.93 13 18 0.031 3.9 9.0 0.9 3 23 678 698 677 698 0.98 14 18 4e-06 0.0005 21.2 4.0 1 23 708 730 708 730 0.98 15 18 0.0068 0.85 11.1 1.3 1 23 736 758 736 758 0.98 16 18 8.4e-05 0.011 17.1 1.6 1 23 764 786 764 786 0.98 17 18 0.0014 0.17 13.2 0.8 1 23 792 814 792 814 0.97 18 18 2.1e-05 0.0027 18.9 3.6 1 23 820 843 820 843 0.98
Sequence Information
- Coding Sequence
- ATGCAAATAGAAACAACAGCCGCAGAGTCTGATTCGATATCGCTTGAAGAAATTGTACAAATAATTCCAGAGGGGTATCATTTAGTTACATTAAACCCTGAACCGGAAGAAGAATTCTGTGAAGACATTGGGGAGATAAGATCCGAGGAGAccgaaataaatgagaaagtGGAAACCACTGATATCAAACTTGCTCTAGTATCCGAAAGTCATGATATTCAGAGATcagaaaagattttcaaattttctaaatctgTATTCGGATTGAATAATGATATAACTAGTTCCCCATTAGTGTGCAGACTTTGTGCAACTCGGGGAAACGACATGGTTTATATTTTCGGAAATAATAGAACTTACAAAAATGTTATAGGAATGATTGAACAGTGTCTAACTATAGTGGTAAAAAAGTCTGATAATCTACCAAAACAAGCCTGCCGTTCGTGCCTAGAGAGACTTGAATTGTGTTATCAGTTTCATAAGACTGTAACAGAGGCTGAAAAGCAGCTCCTTATGTTAAGCGGAAGAGTATTTCACCAGActacgaagaaagaaaaattgcagctATGTGATGGACAACAGGATTCAACGACAAAACTCGAGGAAAATCATGAAATTGTCAAGACTATTATCAATGAAGAATTGCAGAGCATGGATACAACTGAAGAGAATGTCATCGATTCATCTGATTtagaaataatatcaaaatctcaagtttattcaataaaagaaTTAAGATCTGATAAAAGAGATTCAGAAGAAATActtaaaagtaataaaattgctgttgaaaaatatgagaaagaTAACACAGTTAGTAATATTATCATTGAGGAAGGGGGAGTTAAATATGAGACTTTTTCTGGCCAGAAAATCGAttgtaaattgataaaatgtcGTATTTGTGGAGAAGCTTTCAAGACTGCTAAAAAATGCCATATACATTCTAGCGTTCATGCTTTAGAAAATTACTATCCATGCAGTCAATGCGATAAAACATTTACGATTGAAAAGGACTGCAATGTACATAATGCAGACCATACAGatactaaaaaatttgaaagaagagCCGCGACTCACGTCTGTAAAGAATGTGGTAAGAAATTTGTAACCGAAGCTAGACTACAGTTTCATAAAATCTACCATAATTCCGATACTAAACCCTGCTATTGTAAAAAATGCGATAAAATTATGGCTTCTGAGTCTTCTTTATATCAACATATGCTCACTGTACACAGACAGTACAAGGAATACTGTTGTGATATTTGTGGAAATCagtttagagCCCAAGCCCAACTCTCTGCCCATCAAAGGAAACACAAAGACGAACGTCCATTCGAATGCGAAATTTGCAATAAAAGATTTTACTCAAACGATATACTGAGGCGTCATAAAACGCTGCATCTACCTGACAAACCTTATCAGTGTGATCAGTGCGGTAAACGATTCGACAGAAACAATACTTTGACAAAACATTTGTTGAGACATCAAGTGGAAGCTGGTCAATCTGTGACGTGCCAAGTTTGCAATATTTGCAAAGAAGTATTTGCGAATGCTTTAATTGCAGAGACACATTTGAAGGATTGTGCACTGATCACCGCAGACAATAATCAGGATAATAAAATAGTGGAATTGAACTTGAAGGAAACATATAGATGTGAATACTGTGAAAAATGCTATacagaaattgaatttatgaaGAATCACAGATCATGTCACAGCGAACCGTCCCCGTACATATGCAGAGTATGTGACACAGCTTACATGACTTATAATCAAGTTACGGCGCATAAAACGGCGCATAAAAAGTCTCGTAAAATTACAAGTCTTAAAGACGAACTATTAATTCCGAGATATTTCGCCTGTGAATATTGCGACAAACAGTTCCTTCATTTCACCAACATGAATATTCACAGACGGTCATGTTCAAACGGAAAAATTTGGACTTGCAGATACTGCGGAGCTGTTTTTGAAAATGCTAGAGAACTCTCAAGGCATAAAAAGGGAGAAATTAACGACGAAACTTGGCTTTGCAATGAGTGCAATAACAGCTTTGGCTCTGAATGTGCCCTGGAAATACACAAAGAGACTCATTCCACTTTGcagaaggataaaaaaaacttttcgtgTTTACAttgcgaaaaaatattcacccAGAAGGCTCATCTCACTATTCATATACGTAGTCACACAGGGGAAAGACCTTACAATTGTGACTTGTGCGATAAGGCATATAAGATAAAAACTGAGAGAGATAATCACCGCAGAACTCATTCTGGTGAAAAACCATTCAAATGTTCAATATGTGAAAAGACGTTTGCAAATACAGCTAGACTAAGAGAACACACAAGATTTCATTCGGGAAAAAGACCGTACAATTGTTCCCTCTGTAATCAATCCTTCAAGAAAGCAAACGCTAGAAATGTTCACATGACTATACACACTGGGGAAAAACCCTACCAGTGCGACGTTTGCGGAACTCATTTCAGACGAACCGGTGATATGCGAAAACATAAGAGAACTCAACACGGACAGAAATTGAAGAGTAAAAATGAGACGAACTTTGAAATTGATTCTAAAATAACTGATGCtttgtaa
- Protein Sequence
- MQIETTAAESDSISLEEIVQIIPEGYHLVTLNPEPEEEFCEDIGEIRSEETEINEKVETTDIKLALVSESHDIQRSEKIFKFSKSVFGLNNDITSSPLVCRLCATRGNDMVYIFGNNRTYKNVIGMIEQCLTIVVKKSDNLPKQACRSCLERLELCYQFHKTVTEAEKQLLMLSGRVFHQTTKKEKLQLCDGQQDSTTKLEENHEIVKTIINEELQSMDTTEENVIDSSDLEIISKSQVYSIKELRSDKRDSEEILKSNKIAVEKYEKDNTVSNIIIEEGGVKYETFSGQKIDCKLIKCRICGEAFKTAKKCHIHSSVHALENYYPCSQCDKTFTIEKDCNVHNADHTDTKKFERRAATHVCKECGKKFVTEARLQFHKIYHNSDTKPCYCKKCDKIMASESSLYQHMLTVHRQYKEYCCDICGNQFRAQAQLSAHQRKHKDERPFECEICNKRFYSNDILRRHKTLHLPDKPYQCDQCGKRFDRNNTLTKHLLRHQVEAGQSVTCQVCNICKEVFANALIAETHLKDCALITADNNQDNKIVELNLKETYRCEYCEKCYTEIEFMKNHRSCHSEPSPYICRVCDTAYMTYNQVTAHKTAHKKSRKITSLKDELLIPRYFACEYCDKQFLHFTNMNIHRRSCSNGKIWTCRYCGAVFENARELSRHKKGEINDETWLCNECNNSFGSECALEIHKETHSTLQKDKKNFSCLHCEKIFTQKAHLTIHIRSHTGERPYNCDLCDKAYKIKTERDNHRRTHSGEKPFKCSICEKTFANTARLREHTRFHSGKRPYNCSLCNQSFKKANARNVHMTIHTGEKPYQCDVCGTHFRRTGDMRKHKRTQHGQKLKSKNETNFEIDSKITDAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01411751;
- 90% Identity
- -
- 80% Identity
- -