Malb000399.2
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- -
- Assembly
- GCA_949628255.1
- Location
- OX451206.1:2373346-2376308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.9e-05 0.0024 19.1 4.5 1 23 264 286 264 286 0.98 2 12 0.017 2.2 9.8 2.2 2 23 292 313 291 313 0.95 3 12 7.2e-05 0.009 17.3 0.6 2 23 323 344 322 344 0.97 4 12 9.2e-06 0.0012 20.1 6.1 1 23 440 462 440 462 0.98 5 12 0.0031 0.39 12.1 1.1 1 22 467 488 467 491 0.90 6 12 3e-06 0.00038 21.6 0.6 1 23 530 553 530 553 0.93 7 12 1.4e-06 0.00018 22.6 1.1 1 23 587 609 587 609 0.98 8 12 0.0002 0.025 15.9 4.0 1 23 623 645 623 645 0.96 9 12 0.00018 0.023 16.0 4.7 1 23 651 673 651 673 0.98 10 12 0.0016 0.21 13.0 3.2 1 23 679 701 679 701 0.98 11 12 5.6e-05 0.007 17.6 6.5 1 23 707 729 707 729 0.98 12 12 0.00082 0.1 14.0 2.1 1 21 735 755 735 760 0.92
Sequence Information
- Coding Sequence
- ATGGACattaaaattgatagaaaaatcgCTGTAGAGAATATATACGATGTTTGTCGGGTTTGTCTTTCctcgaatgaaaataacgaatttatttttcgtgaTGAAGTTaaggaattaaaaattgaGGATAAATTTACCCTGTCACAAAAACTCCAACTTTACGGTGGCATAGAGATCTGGGAGGACGATGGGCTTCCTACAAAAATTTGCACCGTTTGCATTTCTAAAATTAGCGTCGCACACGATTTTCGTGATCAATGTCAAAAAGCTGACGAAAAACTTAGGAAATTATACGGCAAACCTGAACCTAGAAATAATACCAAACTTCCCAAATGCCAAAAGGATCAGCAATGTCAAACAGATATATTCTTGTTATCAGTATGTATTaaggaggaagaaaaagataagATGCAGCAGCAAAGAACTGATAATACTGACTTTGGAAAGGAGTTAACTAAAGACCCACAACtttctccaaaatttttttataaagatgATATCGAAATTGAAGAGCATAAAATCCTGCCTGATCTTAATCTCGAGCAACATCAGATAggtaacgaaaaaattttggtaaaaaaagaGTCTTATAGAACGAGGAGGGTTTCGATGTTTAAGAGAATGACTTCTATGGTGAATTTAAAAAGTCATAAAGAAAGACAGAGACAGTATATAAAGAAGAATGCAAACTCTAAGGTTGAATCAAACGAGCAGGATTTATGCATGATTAAAAATACTAGAATGAGATCGAACAGGTCGATTGATTTTAGTTTGGGTTCTGAACTATCGCACAAGTGTGGTAAATGTAATAGATCTTATTctacaaaaaaatcgttggaaAGACACACGATTACtcacgaagagaaaaaattaaattgcaaTAAATGTAGCAAGCAGTTTTACAGAGTTGAGAAATTGTTAGAGCATAAAAAACAGCATGATTCTCAGGATAAACCTGAGCCGGTAGTATGCAAAatatgtgataaaaattttcgaaaaacagATACTATGGTCAGACATCTGAATATCCATAAAAAGGCTAATCCTAAAGaagtattttctattctaaaaGAAATTAGAGACAGAAGAAAACTGGAAAacaaaatggaaaattatacTGAGGATGGAAAGCCAGTTAACAAGGATGAAACGGCTGAGCTCAGCAAGGAAGAAAGTAGTAGCGGAGATGAGACTGAGAGAAAGGAGATTAGCAAACATCTCCCAATGTCGAATGATGATCAGGACTATAATCCTGATTCTCCAAATACAGAACCCCACAGCGACAGCGAAACTGATTTCTTCAATAACTTGGCATTCTACAGATGTAAACATTGTACAAAATATTACTCGACTAAAAAATCACTACAAAGACACATGTTGATACATGACGAAAAGAAATTCATCTGTAACGTTTgcaatatgaaatttttcagacctgATAGACTAAAGAGTCATAGGGACAGGTACGGGCATGACGAAGACAAAGAATGTACAGAGCCACAGAAACCGCCCGATGATAAATCGgcgataaaattaataaacagtTGGATTAGAGAAGAGTTGGATTCAGATAACGAAGGGAAAGGGTTTCCCTGTGAAATATGCGGCAAGTCTTACGTGACCAAAAAATCTTTGCAAAAGCATAAAGCCAACATGCACGAAAGTAGAACAGATTCTTGTGCAAGTTGCAAAGCAGAAAAATGCAAATGCGCTGAAAAGGCTAgagacaatgaaaaaaagattgaaaaatcaaagccATTCAATTGCGACGAGTGTAACAAGTCTTTTGAAAAGGAATCTAAACTTGAAAAACATTTGAGAATTCACGAGCGTGCTAAAGAACAACAAGATTCTAATTTCAAACGGTTTTTATGTCATATTTGCAGCAAAACCTTTCGACAAAATACCGGACTAATGTTTCATATGCGAACACACACCGGCTACAAACCACATGTGTGTAAATATTGCGGCCGAGGTTTCAcatcaaattcaaattgtaTTAATCACGAAAGAACTCACACTGGGGACCGACCTTTTGTTTGCCATTTTTGTAGCGCTGCATTCGCAAAGTCTTGTACTTTGAAAGCCCATATTACGACGCATACTGGAGAAGCTAATTACCATTGTAAAACTTGCGGAAAATCGTTTAGGAGATTAAAGTACTTGAAAGAGCACAGATTTACTCATACCGGGGAAAAGCCATACGCGTGTAAAATTTGTGGTACAGCTTATAGTCATTCTGGTAGTTTATTTGTACATGAAAAAAAGTGCAAGGCTCATTACAGCAACTACCAAACTGTGTCTGgacaaaatatacaaaattatagCCAGTCGCAAAACAGCGTTAACACATCTTCAGTTATGGCTCCTATAATTCCTATGTTGTCTACGTCGCATCATTTGAGTAATATAAATAATCCTCTGGGAGGTCATGCGAATAAAAGTTACGTTGAAAGTATGCAGCGTATGAGCGCTCATGcagctgctgcagcagcagttgGTAATCCGGCTTTGCATATGCATCCGAATCCTGATGTTTCAGAAATGGCTTCTGCAGTTAGGAGTTTTGCTATAATAGGACAAATGTTTCACTCGTAA
- Protein Sequence
- MDIKIDRKIAVENIYDVCRVCLSSNENNEFIFRDEVKELKIEDKFTLSQKLQLYGGIEIWEDDGLPTKICTVCISKISVAHDFRDQCQKADEKLRKLYGKPEPRNNTKLPKCQKDQQCQTDIFLLSVCIKEEEKDKMQQQRTDNTDFGKELTKDPQLSPKFFYKDDIEIEEHKILPDLNLEQHQIGNEKILVKKESYRTRRVSMFKRMTSMVNLKSHKERQRQYIKKNANSKVESNEQDLCMIKNTRMRSNRSIDFSLGSELSHKCGKCNRSYSTKKSLERHTITHEEKKLNCNKCSKQFYRVEKLLEHKKQHDSQDKPEPVVCKICDKNFRKTDTMVRHLNIHKKANPKEVFSILKEIRDRRKLENKMENYTEDGKPVNKDETAELSKEESSSGDETERKEISKHLPMSNDDQDYNPDSPNTEPHSDSETDFFNNLAFYRCKHCTKYYSTKKSLQRHMLIHDEKKFICNVCNMKFFRPDRLKSHRDRYGHDEDKECTEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYVTKKSLQKHKANMHESRTDSCASCKAEKCKCAEKARDNEKKIEKSKPFNCDECNKSFEKESKLEKHLRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAHYSNYQTVSGQNIQNYSQSQNSVNTSSVMAPIIPMLSTSHHLSNINNPLGGHANKSYVESMQRMSAHAAAAAAVGNPALHMHPNPDVSEMASAVRSFAIIGQMFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414402;
- 90% Identity
- iTF_00939811;
- 80% Identity
- -