Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.014 18 6.3 2.7 17 31 48 62 42 73 0.83

2 7 2.2e-08 2.8e-05 24.9 1.1 8 43 94 126 93 127 0.91

3 7 0.54 7e+02 1.2 0.5 19 26 135 142 133 145 0.88

4 7 0.094 1.2e+02 3.7 2.9 14 41 185 209 173 211 0.76

5 7 0.43 5.5e+02 1.6 1.7 14 26 213 225 201 232 0.76

6 7 7.2 9.4e+03 -2.4 11.8 14 39 269 291 230 295 0.84

7 7 0.0057 7.4 7.6 0.4 19 44 304 326 301 326 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.014	18	6.3	2.7	17	31	48	62	42	73	0.83
2	7	2.2e-08	2.8e-05	24.9	1.1	8	43	94	126	93	127	0.91
3	7	0.54	7e+02	1.2	0.5	19	26	135	142	133	145	0.88
4	7	0.094	1.2e+02	3.7	2.9	14	41	185	209	173	211	0.76
5	7	0.43	5.5e+02	1.6	1.7	14	26	213	225	201	232	0.76
6	7	7.2	9.4e+03	-2.4	11.8	14	39	269	291	230	295	0.84
7	7	0.0057	7.4	7.6	0.4	19	44	304	326	301	326	0.92

Coding Sequence: ATGATTAAAATAGAGGTGACTCCAGACTTGCCTTGTAATCTTGAAACGGAAAATGAACTAAGGTCAAATGTTAATGAATTTGTtgttgaaaaaagagaaaataatgatGTAGAAttaagtgaaaataatttgaataacttGTATCGTTGTACTTATTGCAAAAAGGAATACAAAACTAAACGAAGTATCATTAGACACTTTAAGTTAAACAATTGCACGGGGGAATTGAAGCGAAATGAAGATGACGAGAATTTTATAGAAGCTAGAAAACGGGGTCCAAGAATAGTTAAACTAGCTGATAATAGATACCAGTGTAGGCATTGTGAAAAGACATACACTCagaagaataatttatttcgtcaCATGCGAGAGGATCATGTTAAACTGGCCAAACCAACTTGTTGCAATGTTTGTGGTAAAGAATTTTACAACTATGAAAAATTGCATCAACATCAGAGATGTCATTCTGAAAAACCTTACGAATGTTCTATATGCTGTAAAAGATTTTCTCAAGTAGCTCATGTTCAGAGTCACATGTTTACTCATACGGGTGAAAAACCATATCAATGCCACATATGTGAAAGACGTTTTAGCAAGtcttttaatttgaaaattcatataatCAGGCATAACGgtgaaaaacaatttaaatGTCGGATTTGCCAAACTGAGTTCTTTACTCACGGAGAACTTGAAAAACATGTTCGGATACATACAGCAGAAAGACCTTATTCCTGCGATACTTGTGGCAAACGTTTTAAGCAAAATGCTCATTTGAAAAAGCATCTTTTAAGTCATACTGGCCAGAAACCATACAAATGTACAATGTGTAAGAAAGATTATGTTAATTCGAGTCACCTCAAGAAACACCTTCTCACTCATAGTGGAGAAAAATTGCCAGAACATCTGTGCCCTATTTgtggtaataatttttcacaaccAAGTACTGTAAAAAGGCATATTGAAAAAgtacacaaaaaattttctcacgtGTAA
Protein Sequence: MIKIEVTPDLPCNLETENELRSNVNEFVVEKRENNDVELSENNLNNLYRCTYCKKEYKTKRSIIRHFKLNNCTGELKRNEDDENFIEARKRGPRIVKLADNRYQCRHCEKTYTQKNNLFRHMREDHVKLAKPTCCNVCGKEFYNYEKLHQHQRCHSEKPYECSICCKRFSQVAHVQSHMFTHTGEKPYQCHICERRFSKSFNLKIHIIRHNGEKQFKCRICQTEFFTHGELEKHVRIHTAERPYSCDTCGKRFKQNAHLKKHLLSHTGQKPYKCTMCKKDYVNSSHLKKHLLTHSGEKLPEHLCPICGNNFSQPSTVKRHIEKVHKKFSHV

Sequence clustering based on sequence similarity using MMseqs2