Mcin003839.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01007220.1:214387-218502[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.4 1.9e+02 2.9 3.6 2 23 225 246 224 246 0.95 2 13 0.26 35 5.2 2.7 3 21 345 363 343 364 0.94 3 13 8.7 1.2e+03 0.4 0.6 1 10 413 422 413 423 0.90 4 13 0.0027 0.37 11.5 0.0 1 20 476 495 476 497 0.93 5 13 0.017 2.3 9.0 0.2 2 23 563 584 562 584 0.93 6 13 0.058 8 7.3 2.3 1 23 596 618 596 618 0.97 7 13 1.1 1.5e+02 3.2 0.0 1 20 624 643 624 645 0.92 8 13 0.055 7.5 7.3 0.9 1 23 663 686 663 686 0.95 9 13 0.02 2.7 8.7 0.1 1 23 1025 1047 1025 1047 0.94 10 13 1.4 1.9e+02 2.9 7.0 1 23 1228 1251 1228 1251 0.97 11 13 0.021 2.9 8.6 1.1 1 23 1283 1307 1283 1307 0.97 12 13 2.1 2.9e+02 2.3 1.2 2 23 1318 1341 1317 1341 0.91 13 13 6.4e-05 0.0087 16.6 1.1 1 23 1343 1365 1343 1365 0.97
Sequence Information
- Coding Sequence
- ATGAATCACAATTTATTCAAAAGATGCAAACCGTGTTCAGTGAGAATAACACGTTTGTCCAAGTCTGAACTTGTCAGGCACAAAGTGATTACTTCGCAAAATACAGAACGAGGCTCACATTCCAATAAACATAAGGACAAGCCGACAGCCCACTCGCCTCAGAGACCAAGAAGACAAGCAACACCTGCGTGTTTTGTGACTGACGAGAGTGACGTCGAGTCTACAGAGTCTGACTGGAAATACGAGCATAAATCTGACAATCCAAAAAACAGCGATAGCACGTCGTCAGACGATGAGCCCACGTCGTTGACATCGGGCAGTTTCCAAGAGAAAAAAGATGATATACCTCGGAAAAAAAAGCGCAAGCggatatcatcatcatcatcctctGATGGAGAGCACAAGAAAAAACGTGAATCTTCGCCAGTGAATCAATTGTCAATCCAGCCAACGCCCAATAATGACGAAAGTATGAAGATTGACACTCTGCCGCAACCTGCAAGCAAACAACAACCAACAGACCCCATTGGCAAAGAGCCTACAAATGAACTGAAGCCTCAAAAACGCCGATCAAAAACCAAATCCGTCGACTCCGAGACTATTACAGAGTCGCCAAAGAGCAAACGATCGCTCTGGAAACGATATTCACTGCAACCGAAAACACTCAGTTTGAAGTGCAGCGTATGCAAGATTCAGTGTGAGAATCATGAGAAACTGTCTGAACATGTGTTCAGCCATACAGCACGGGAGTTGCAGAACGCGTACAAAGTTGCTCGAGACAAACAGGATAATGCAGACAGTGACAGTAAAGTTTCTGATCCGGTGGTAGCCGAACAACAGTTGGGAACAATCGGCGACAATGATCTGATTGAGGATGATGCAGTGGACAGTAAGCTCGTAGTGTCGACATCGTGCATAAATGTCAAAGTGTCGTCGGCAACCGATAGAACATTGTCAGTAGCTATGTGTGCCTGCCACAGTGAAAGCAATAAAACGCCAGAAGAAGGAGTACAAATCGAGATGGTTCTCTTCTGTAAAATATGCCGAGTCCTCTTCCGGCGCCAAGAATGCTTTGAGACTCACTATCGCTTCAGTCCAAAGTGTTGTGGTGATCGTAAAAAGAATAGAATACCAAAATTGTTTTGCAGTACATGCCTAGTAATTCTCAATGGTTTAGCAGTCATGCGACGACACCTTGAAGACCATGCAAGCATCAATTATCACGGGACAGTTAATTTTGTTTGCAACATATGTAGAGTTGTGTTTTTCGGCGTTGGAACGGTATTTTGCACTCATTGGTTTAATCATGAAAAGGATAATACCTTTGTTGCCAGTCGACACTCATTTCCAAAGTTGTGTATAACCAATACTGGCCAAAAGCCCAACGGCTGTGCTCCCAATGAACAGTATATTTTTGTTGCTGAGTATGTGTGCCGCATCTGCAAGCTGCAATTTTCATCCGAGAGTGAGTTGTCTGTACATGCGGCCACTGAGTGCAGTTTAAGCAGCATTACAACTCGAACATCGCGCAAGGACAATAAAGCTATTACTAGCAAGGGTATTGTGAATAAACTCACGCCAGTTGTTGCAAAACGAAAAGAATCTAAGCCGGTTGCGTCTACTGCCACAACAGCACCGCCATCATCATCAAACAATAAGACTGCAGCCTCCCCGGATTTCCATTTAATTTGCGAGGAGTGTAAGGAAATTTATCCAAATCAAAGTAAATTTGAGGAGCATTTTGTCAAGCACTTCCAGGACAATGACTATCCGTATATTGCTCCATACGTCTGCAATGTATGCCTTacattttatcataatttaaagGAGTTTAATAGACACTGGGTCACGCACATTGCCGTGATTAAATTCATCTGCACTGTCTGCAACATGCAATTATCAAATATCGATGTGTTTCAAACACACATTGCTCAATCCTGCTGGAAACAAAAACCAAACTGTCGCGTGTGGTTCAGCCATCGTCATCATGTCTGCAAAATTTGTCGTAAAAATTGGAGAACTATGGAAGAATTGGCCAAACACTATATAAGTGATCATACGAAAGAAACAAATTCCAGTATCACAAACAGTCTACGACCAGTTACACCAAGTAGTGCACcggaaaaatctaaaatatctGTCCACGagtcaagtgtaaaaaatctaaagtCGGTTGCAGCaaaattatgtgaaaatgTTGAGAATGTCCCAatgtcaaataataatatttcaatgcaaTCATCAATATCAGACACGAGGAGTATCGACaaatctaataataaaaaatcacactcaCGGCATTCATCAGGGAATATCGAGTCGAGAGATAAAAAGATAGGAGATAAACAACCGAGACTGGATACCCAAATACCATTGCTTCAGATTGCACTGACTAATCCGGCAATAACTGCGAATCGCCTGCAGTCTatcaatgataataataaagcTTATCATCAGTCATTGACGTCAATCACACGAAGTGATACGAATTTACACGCTACCAATGTAGTCAATCTCGATCAAAGTGTAATTCAAGCACGAGGAAAAACTTATAAATCTAGTGCAGTCAGAAATGTAATTCAATCGCCAACGAAATGTTTGCTGCAATCGCCACCCGGTCCCCAGGTGGTGTTGCACGGCGCTGCAAACGAGCTTTCATCATCGGTCAGCGAAGCAGGAGGTAATCTGAGAATAGTGGAGGATGTGAATGGAAAGCAAAAAGGTGCAGAGACCATTAAAATTACAGACGATGAGCCGGAAATTATTGAAGTTCGCGCCAACTCACGAACATCTATACCAACGCCAACAATAACACGATTTTATACAAACGCCGAACAAGCTACACCTCAGCAAGTGACGGAGAAAACTCGTGAGCCCAGCGTACCACCAGTTGAATCGAGAGAATTACCAGAAAGTAATTCTGCAGCGAATGAGAGCACAACGAATGACAAAGAGAAGCAAGCGGTGGAGCAGACGTGTCGCAATTCCGAGGATTCGTCCTCAACAACGAGCGCAAAGCCGCAGAATTTTTTGCGTGTAAAAAAGTTCCAAGATCTGCAAGCCGTGAAGGACTATATTTGTGATCAGTGCAGAGCAGCATTTGACAATATGAAATCCCTAACTGAACACTTGGTGGGACACGCAACCTCACTACTCGGGGCAACTACTCCAAATCCGCGACCGACAATGCTCGCTGCATTGATACTACCTCCATCAGATCCAAATGTCGTCGAAATACCAACGGCTCCTCCAGCAACAATCCCGGAAATGATAGAAGTACCCGCTGGGCCTCAAGCCATGGCCGGCAAACGAATACTTCCGTACATTCCTCAAAGAGTACGACATGCCGAGGCGCGTCGAGTCAGTCCAGTGCAGCAAGAAGCCTATCAGCATAATAATCTACAGCAGTTTAATCAATTTCCAATGCACAATCCGCAGCCGCAAGTGATGCCACcaccgcagcagcagcagcagcagcagccgtaTCATATGTCGGAATTCCttcaatttaacaataatcaaaaaacCGACAGTGTATTGAGAAGTCATGCTATGGCAGTTCCGCTGCCAATTGAGCAGACCTACACCAATGCTCCAACGACCGTGGCAATTATTGACGATTTGCCGGGAAATCCGCCTGTCCCTGGATCCAACGACCTTAACAAAAGCAAACCAATAGTTTACACATGTAAACTCTGTAAATTTAGCACATTCGATAAGCACCACATCTTTGATCATGTTCGATACAATCATTTTCCGAATGGTCAGGGTCCGGCAAACGTTGCCCCGCTGCAGCCTGCACCAAATCACGTAAATATGCCATTAAACAATACTACAAACATTGTTTACAGATGTCATGTGTGCAGAAATTATCAGTATGCTACGTATGAAGAATTAACGTGGCATATTCAAACTGCGCATCCGACGGTACAGCGTGCTTCCCTTTGTTTATCTTGTATGTATTGTTCAGCGACtaattttgataatgaaaTTTCGTTGAGACATCACGAAAATACCTATCATAAGTTTGCCTGTAAAATTTGTCCTGTAAGATTTTCAACAGTTCATGAATTACTTAATCACCAGAAATCTCATCAGAAAATATTGTCAatatga
- Protein Sequence
- MNHNLFKRCKPCSVRITRLSKSELVRHKVITSQNTERGSHSNKHKDKPTAHSPQRPRRQATPACFVTDESDVESTESDWKYEHKSDNPKNSDSTSSDDEPTSLTSGSFQEKKDDIPRKKKRKRISSSSSSDGEHKKKRESSPVNQLSIQPTPNNDESMKIDTLPQPASKQQPTDPIGKEPTNELKPQKRRSKTKSVDSETITESPKSKRSLWKRYSLQPKTLSLKCSVCKIQCENHEKLSEHVFSHTARELQNAYKVARDKQDNADSDSKVSDPVVAEQQLGTIGDNDLIEDDAVDSKLVVSTSCINVKVSSATDRTLSVAMCACHSESNKTPEEGVQIEMVLFCKICRVLFRRQECFETHYRFSPKCCGDRKKNRIPKLFCSTCLVILNGLAVMRRHLEDHASINYHGTVNFVCNICRVVFFGVGTVFCTHWFNHEKDNTFVASRHSFPKLCITNTGQKPNGCAPNEQYIFVAEYVCRICKLQFSSESELSVHAATECSLSSITTRTSRKDNKAITSKGIVNKLTPVVAKRKESKPVASTATTAPPSSSNNKTAASPDFHLICEECKEIYPNQSKFEEHFVKHFQDNDYPYIAPYVCNVCLTFYHNLKEFNRHWVTHIAVIKFICTVCNMQLSNIDVFQTHIAQSCWKQKPNCRVWFSHRHHVCKICRKNWRTMEELAKHYISDHTKETNSSITNSLRPVTPSSAPEKSKISVHESSVKNLKSVAAKLCENVENVPMSNNNISMQSSISDTRSIDKSNNKKSHSRHSSGNIESRDKKIGDKQPRLDTQIPLLQIALTNPAITANRLQSINDNNKAYHQSLTSITRSDTNLHATNVVNLDQSVIQARGKTYKSSAVRNVIQSPTKCLLQSPPGPQVVLHGAANELSSSVSEAGGNLRIVEDVNGKQKGAETIKITDDEPEIIEVRANSRTSIPTPTITRFYTNAEQATPQQVTEKTREPSVPPVESRELPESNSAANESTTNDKEKQAVEQTCRNSEDSSSTTSAKPQNFLRVKKFQDLQAVKDYICDQCRAAFDNMKSLTEHLVGHATSLLGATTPNPRPTMLAALILPPSDPNVVEIPTAPPATIPEMIEVPAGPQAMAGKRILPYIPQRVRHAEARRVSPVQQEAYQHNNLQQFNQFPMHNPQPQVMPPPQQQQQQQPYHMSEFLQFNNNQKTDSVLRSHAMAVPLPIEQTYTNAPTTVAIIDDLPGNPPVPGSNDLNKSKPIVYTCKLCKFSTFDKHHIFDHVRYNHFPNGQGPANVAPLQPAPNHVNMPLNNTTNIVYRCHVCRNYQYATYEELTWHIQTAHPTVQRASLCLSCMYCSATNFDNEISLRHHENTYHKFACKICPVRFSTVHELLNHQKSHQKILSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -