Mcin011518.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Macrocentrus cingulum
Gene Symbol
-
Assembly
GCA_002156465.1
Location
MVJL01010774.1:2950-6358[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00017 0.023 15.3 0.3 2 23 454 477 453 477 0.95
2 10 0.0046 0.63 10.7 1.5 1 23 483 507 483 507 0.98
3 10 7.9e-05 0.011 16.3 0.2 1 23 513 537 513 537 0.97
4 10 0.0007 0.096 13.3 0.1 4 23 548 567 544 567 0.91
5 10 0.019 2.5 8.8 3.6 1 21 574 596 574 598 0.95
6 10 0.00021 0.029 14.9 0.5 2 23 606 629 605 629 0.95
7 10 2.4e-05 0.0033 17.9 0.5 2 23 636 659 635 659 0.92
8 10 0.00011 0.015 15.9 0.6 1 23 665 689 665 689 0.97
9 10 0.00016 0.022 15.3 0.9 1 23 695 717 695 717 0.99
10 10 0.00019 0.026 15.1 0.7 1 23 762 787 762 787 0.95

Sequence Information

Coding Sequence
ATGTCTCATGACAAAGTTTCCACTACCATTCAATCAGAGTGGATTccgcaaatatttcaatgtcCAAAAATCACCGAGAGCGATTGGGATCTGTCGATAGAAACGGAAGAACCCACAGACCCAAGTTGGGATTGTGAGGTTATGTACTCCCGTCAGTCAACAACTGACAATAAACCAAAGAATCCAAGCAAAAACTGCAAATTTCCCAGCCCAAAGGTCACCACGGACAATTCACCGAGGCACTGGAACAGGTACTATCAAAATAACTCCATTAATTCTGAAATACTAAATGGCAGTGTTTCCCGAGGAACGACCGAGGCGGCGGCGGTCGACATTGATAAGTGGTTGAAACCCCGCACAGAGTCCGTTTCCAGCCTAGAAATGGATCCACTTAAATCCGATGTTGACGGTGCAGTCGGTCAATACCTGGCCGATGAATTGTCCCACTCATTTCTCGAGAAAGATCCGCACGAGCTCATCGACCTCGACCTATCAGACAAAAAGCTCAGTCTCGGCTTTGACCCAATTCTTCAAGAGTTGCAGAGCGACAAGTTGCTCGATGTCTGTGAGAAGCATGAATTTATCCTCCCCGGATTCCAGCTCGATCAATTGGATCCACTGGGCCTGACACCCAACGAAATGATGGTGGCCGGCGAGGTTTTGCCGTCGACAAGCATTCAACCGCATTTGAGCCTGGCCGAGCCATCCGAGGAGTACTCCAGTGACGATCAAGTTCGCCCAGAAGAAATTTGTGATAAAGCAACTCAAGTGAACGTATTTGACGAGCTGGTTCCCGGCATAGAGAACACATTAAACGATCCGAAAGAGCAGGCAATCATGGAAGAACTCATCGCCGAGACTCCAGCAACACTCGAAAATATTCCCGTGATCACTGCCTCGGAAATTGAGCGTGAAATTGAGGTTTCCTGTGCGCCAAACTGCCGTACTAAGTCGAAACTGCAGCCAAGCATAATGAAAAAACGTCACAAAGCACCAGAGACGCAAAATAATACGGTGCAGCGTGCGGAAGACTGCCAGACAGTGAGGAACGACGGGATAATGGCTGTCGTGGCGATATCCACGGACAAGCGATCAAACATGACGCAAATTGTGATAAATACCGAGCGTGGCGAGCAAATCTATCAGGGGAAGACGTCGGAATTGATGGAGGCCACTGGATACTTCACCAAGCAGTCAAATATGGGCACAGGCACGTGGAATCGCTCGATGAATGACTGTCCAGACAGTTGTGGATCGAATAGTAATCATGAACTGATAATAACGAGTGCCCTCGAGGAGCTGGGCTACACCGATGACATTTTACTGTCCTCGGCCATGCCGGACAACGGGAACTCCTGGATGTGCCCTCGTGAGGATTGTCGACGCGAATTTAATCGGCTGTACGCTCTAAAAAGTCACTTGCTAACTCACTACGGAGTTCGTCcattcaagTGCGATTTCGAGGGCTGTACCTGGGCATTCTATTCGGATTTCAAGTTGAAACGTCACAAGGAGACTCACTTAAAACGTAAAGATTACGTCTGCAGTATTGCGGGCTGTGACAGACGTTTTACGACAGTTTACAATCTTTGGAGCCACGAAAAATTGCACACTCGACCCAACAGAATAGCCTGTGCCGTGCCCGAGTGCGAAGAAAAATTCCAGACAAAGCGTGCACTCGAATTGCACATGAAGACGCACGACGAGAGCCACGCGTCGTACGTATGCCCGCACGAGGGCTGCACAAAGCGTTACTTTAGCAGCAACGCGCTTACATCGCATCAGCGCTGCCACAGCTACAAGGAAGCCGACGTAAAGTGCTCTTGGCCGGGCTGCGGCAAGATTTTCGACAAGCCGTGTCGACTGAAGGCGCATCTCCGCTCGCACACGGGCACCAAGCCCTACCTGTGCACCTACCCGGGCTGCGAGTGGGCATTTGCCTCCTCCAGCAAGCTCAAACGCCACCAGAAGAAGCACACAAACGACCGAAAATTCGTATGTGACGTTGTTGGATGCAGCAAGGCTTTTATGCGCTCGGAACACCTGAAGGAACACAAAATCACGCACTCCGAGGGCCGATATTTCCAGTGCTACATATGTGGCGATCGTTTCTCCGCCAAGAGCACTCTCTatgtgcatataaaaaaacaccagAGGAATCTCGATGCCTCTCGACTTCGCGCCGTCGAGCAATTGGACTTTCCTGACGAAATGACCGTCGATTTGTCGCCAAATGACGCAGAAAACACTGGCGGAAAAGTCATCACAGTGGTGAAACCACGATTTGCCTGTCCTGTGCAGAATTGCGACAAATCATATCTCACTAAATCGTCGCTCAAGACCCACATGATTCGCCGTCACGGCCAGAAACAGGACGACTCGCCGCCGTCCGACGTTGCACAAGTGAATTGGACACAAGCTACGATGGATTCCACCAGTCAAATAGTCGCTCCCGTGGACTCGGCCATCCTCAATGCTACTCCGGACACTACGTCAGCTTTGCCAGAGCCCGAACCACCACCTAGGCGGCCCAGAATCCTCCTGGCAAACGGATCAGATCGCACTAAAACTCGCCGAAACCATGGCGCTGCACGAACTGGTTTAACCTGCGCTGatgtttggaaaattaaatccCAGGGACTTGTGACACTCAATTCCGTTGCCAATCCCTCGGATGTAGATCTTGGCACTGCCAATTTGGACGATGGATTGCTGTTAACTGAGGAATTACCCTCGATGTATTATAACGATGATATTGTGGGCAATGAGtgtcaaattttattgcttgatGCTGCGGTGGAGAGTACGATTAATTTGCGCGATCTTGAGTGA
Protein Sequence
MSHDKVSTTIQSEWIPQIFQCPKITESDWDLSIETEEPTDPSWDCEVMYSRQSTTDNKPKNPSKNCKFPSPKVTTDNSPRHWNRYYQNNSINSEILNGSVSRGTTEAAAVDIDKWLKPRTESVSSLEMDPLKSDVDGAVGQYLADELSHSFLEKDPHELIDLDLSDKKLSLGFDPILQELQSDKLLDVCEKHEFILPGFQLDQLDPLGLTPNEMMVAGEVLPSTSIQPHLSLAEPSEEYSSDDQVRPEEICDKATQVNVFDELVPGIENTLNDPKEQAIMEELIAETPATLENIPVITASEIEREIEVSCAPNCRTKSKLQPSIMKKRHKAPETQNNTVQRAEDCQTVRNDGIMAVVAISTDKRSNMTQIVINTERGEQIYQGKTSELMEATGYFTKQSNMGTGTWNRSMNDCPDSCGSNSNHELIITSALEELGYTDDILLSSAMPDNGNSWMCPREDCRREFNRLYALKSHLLTHYGVRPFKCDFEGCTWAFYSDFKLKRHKETHLKRKDYVCSIAGCDRRFTTVYNLWSHEKLHTRPNRIACAVPECEEKFQTKRALELHMKTHDESHASYVCPHEGCTKRYFSSNALTSHQRCHSYKEADVKCSWPGCGKIFDKPCRLKAHLRSHTGTKPYLCTYPGCEWAFASSSKLKRHQKKHTNDRKFVCDVVGCSKAFMRSEHLKEHKITHSEGRYFQCYICGDRFSAKSTLYVHIKKHQRNLDASRLRAVEQLDFPDEMTVDLSPNDAENTGGKVITVVKPRFACPVQNCDKSYLTKSSLKTHMIRRHGQKQDDSPPSDVAQVNWTQATMDSTSQIVAPVDSAILNATPDTTSALPEPEPPPRRPRILLANGSDRTKTRRNHGAARTGLTCADVWKIKSQGLVTLNSVANPSDVDLGTANLDDGLLLTEELPSMYYNDDIVGNECQILLLDAAVESTINLRDLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-