Basic Information

Insect: Macrocentrus cingulum
Gene Symbol: -
Assembly: GCA_002156465.1
Location: MVJL01004305.1:28559-31042[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.028 3.8 8.3 0.7 3 23 238 259 237 259 0.95

2 10 1.8 2.5e+02 2.5 3.7 1 23 265 287 265 287 0.98

3 10 6.2e-06 0.00085 19.8 0.9 1 23 293 315 293 315 0.97

4 10 9.8e-06 0.0013 19.1 3.0 1 21 321 341 321 343 0.93

5 10 2.1e-07 2.8e-05 24.4 0.6 1 23 352 374 352 374 0.98

6 10 8.5e-08 1.2e-05 25.6 0.5 1 23 380 402 380 402 0.98

7 10 2.8e-05 0.0038 17.7 0.7 1 23 408 430 408 430 0.96

8 10 4.7e-06 0.00064 20.1 4.0 1 23 436 458 436 458 0.98

9 10 7.6e-05 0.01 16.3 2.6 1 23 464 486 464 486 0.98

10 10 9.5e-05 0.013 16.0 5.8 1 23 492 515 492 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.028	3.8	8.3	0.7	3	23	238	259	237	259	0.95
2	10	1.8	2.5e+02	2.5	3.7	1	23	265	287	265	287	0.98
3	10	6.2e-06	0.00085	19.8	0.9	1	23	293	315	293	315	0.97
4	10	9.8e-06	0.0013	19.1	3.0	1	21	321	341	321	343	0.93
5	10	2.1e-07	2.8e-05	24.4	0.6	1	23	352	374	352	374	0.98
6	10	8.5e-08	1.2e-05	25.6	0.5	1	23	380	402	380	402	0.98
7	10	2.8e-05	0.0038	17.7	0.7	1	23	408	430	408	430	0.96
8	10	4.7e-06	0.00064	20.1	4.0	1	23	436	458	436	458	0.98
9	10	7.6e-05	0.01	16.3	2.6	1	23	464	486	464	486	0.98
10	10	9.5e-05	0.013	16.0	5.8	1	23	492	515	492	515	0.98

Sequence Information

Coding Sequence: ATGGCAGAGACAGTTTTATGCCGGCTCTGTGCCGAGAATAAAACCGATGTCATCGGGATTTCTGATGCCGAAggcatgaaattaaatatgcGAAATAAAATTGCTACGTTCCTCCACATTGAGGTCACCGAATCTGACGGCCTTCCCCAAACTGTTTGCATAGATTGTTGTGTGTTGCTAAACCAGTGCAGCGATTTTTACGAACAGACAAACCAGGCTCAGACATCCCTACGCGAATTGCTTGTTGATTGCAAGCGAAGAGCCCCCGAGTCTCCCGAGCCGATAATTGAGTACGAGACCAAGACTGAGCAATACACAAAAGTCGATAGAGAGGGACTCGCGAATTATGTGATTGAGTCTGTTACCGAAGTGGCCTATTTGAACGAGAATCCTGAGAGCGATGGTCAGGGAGTATGCGAAACTGAGGAGAAAATCTCCGTGGGAGAAATAGAGgagacgaagaaaaaatcgCCGATGAAAAAACCTGTGAAACAGGTGAAAAAGAATCGCAAGCGAAAAGTGCAGCGAAAAAACTCAAACTCAGCGTCAGGATCGGATGCAGACGAGGACCAGGACGAGTCGCGAGGCAAGCCCAAGATTCCGGATAACTACATGACTGGGACCGATTCGGATAAGGAAATAATTGAGACGCAAGCAAAGGATCCGTCTAAGATGAAGGCGGGCCAGTGCTTGGACCGATATCCTTGGCTGTGCACTGACTGCAATGAGAAATTCTGGAGTCTGGAGATGCTGGAGAAGCATCACGCAAGTGTGCATAACCAGCAAGCCAAGTACATGTGCGTGCAGTGCTGCAAGGTGTACCAGAAGTACTATGGCTTTGTCACGCACGTACGTAGGCACAAAACCAAGTCCAAGTTCTCGTGTGACGTGTGTGGCAAGTCATTTGTACATCAGAAGGTGTTAAACTCGCACAGGGCAGTGCACAGCGAACAGCGGGCTCACGTTTGCGATATCTGCGGAAAGTCATTTCGCCAACAGAGCGCACTGTTTATCCACAATCGTTGCCACTTGCCTGATACAGTGAAAAATCGATATCCATGTGATCAGTGCGAGAAGAGATTTTCTACGAAGCCGAATCTCGTGACACACCAGCGTATTCACTCGGGTGTACGCAATTTTACGTGCGACCAGTGCGGCAAGAGTTTTATTCAGAAGGGCAACCTGGAGGCACACTTTCTCACGCACTCGGCCGACAAGCCGTTTCCATGTTCGCAGTGCAGCAAGGCCTTTAAAACGGCTTTGCAGCTTAAAAAGCACGAGACCGTGCACACAGGCGCTAAGCCGCATCAGTGCACTGTTTGCGGCCGAACTTTTCGCGAAAAGGGCACGCTGCGAGAGCACCACAGAATTCACACAGGTGCTATGCCCTTTACATGTGAATTCTGCGGCAAGAGTTTCCGTTTTAAAGGTATTCTCACGACCCACCGACGTCAACACACGGGTGAGAGGCCCTACAGCTGTCTCGAGTGCCAGCATCATTTCACCAATTGGCCCAATTACAATAAGCATATGAAGCGACGACACGGTATCAACACATCCCACAGCAAGCATCGCCAACAATTGCCTGAAGTTCCAAAAGTCGAGGCGAACTCGCAACCCGAGCTGGCCATCTCTGAGCATTCCATCGAACCGGCTGTGCAAATTGTAGAAGTGGAACCACAGCCGATTATTATCCAAACCATCCCCACAACAACAATTCAAACGTTTCAGGCCGAGTTATTGCCCGTTGCCGCCGAGGAAATTGTGTTGCGACAGAGAAATGGCTCGGCATATTTCAATGGTGTTATTCCTACTACACTGCAGAATTTCTTGCCACCTCATTTGccatataatttttacaatgtcTCCACTGTACCAGAGAGCGACTTGATTCAACCTAAATAA
Protein Sequence: MAETVLCRLCAENKTDVIGISDAEGMKLNMRNKIATFLHIEVTESDGLPQTVCIDCCVLLNQCSDFYEQTNQAQTSLRELLVDCKRRAPESPEPIIEYETKTEQYTKVDREGLANYVIESVTEVAYLNENPESDGQGVCETEEKISVGEIEETKKKSPMKKPVKQVKKNRKRKVQRKNSNSASGSDADEDQDESRGKPKIPDNYMTGTDSDKEIIETQAKDPSKMKAGQCLDRYPWLCTDCNEKFWSLEMLEKHHASVHNQQAKYMCVQCCKVYQKYYGFVTHVRRHKTKSKFSCDVCGKSFVHQKVLNSHRAVHSEQRAHVCDICGKSFRQQSALFIHNRCHLPDTVKNRYPCDQCEKRFSTKPNLVTHQRIHSGVRNFTCDQCGKSFIQKGNLEAHFLTHSADKPFPCSQCSKAFKTALQLKKHETVHTGAKPHQCTVCGRTFREKGTLREHHRIHTGAMPFTCEFCGKSFRFKGILTTHRRQHTGERPYSCLECQHHFTNWPNYNKHMKRRHGINTSHSKHRQQLPEVPKVEANSQPELAISEHSIEPAVQIVEVEPQPIIIQTIPTTTIQTFQAELLPVAAEEIVLRQRNGSAYFNGVIPTTLQNFLPPHLPYNFYNVSTVPESDLIQPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -