Mcin017453.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- topi_1
- Assembly
- GCA_002156465.1
- Location
- MVJL01006101.1:4916-6856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8 2.5e+02 2.5 3.0 1 17 174 190 174 196 0.82 2 15 0.046 6.3 7.6 5.4 2 23 202 224 201 224 0.96 3 15 0.0042 0.57 10.9 0.1 1 20 230 249 230 251 0.94 4 15 2.8e-07 3.8e-05 24.0 0.2 1 23 258 280 258 280 0.98 5 15 1.2e-06 0.00017 22.0 2.6 1 23 286 308 286 308 0.98 6 15 0.15 21 5.9 0.0 2 23 320 341 319 341 0.88 7 15 2.6 3.6e+02 2.1 3.4 1 23 363 385 355 385 0.93 8 15 0.00063 0.086 13.5 0.5 1 23 395 419 395 419 0.92 9 15 0.11 15 6.4 0.0 1 15 432 446 432 452 0.82 10 15 0.00031 0.043 14.4 1.4 1 23 459 481 459 481 0.98 11 15 2.3e-07 3.1e-05 24.3 3.8 1 23 487 509 487 509 0.98 12 15 0.0027 0.38 11.4 2.0 1 23 515 538 515 538 0.96 13 15 0.029 3.9 8.2 2.7 1 23 544 566 544 566 0.89 14 15 2.7e-05 0.0037 17.7 1.1 1 23 572 594 572 594 0.98 15 15 1.1e-07 1.5e-05 25.3 5.4 1 23 600 623 600 623 0.97
Sequence Information
- Coding Sequence
- ATGAGTTGGGAGTCTCCAAGCgccttaattaattcaaaaaacgtGGAAAATCTTGAGATAACTGATGCATCGCACAAATCCAAAACTCCTGAACTCATCGCCCTGGATTCTTACCCATCAAACATCTCAATTTACATCTACTCGGACTTTGGAGAATCTCTGTACGTCGATGAACAAGTGACGAATCCACCAAGCATCAGCGAGAGCCTCACGATCACCGAGAAGGAGTTTTTTCTCGAGTGTTCCAAAGGAATGGAAATTCCCGCGGATTTCCAGTGCCCCAGCAACGCGACAGAGTCGAAAATTTTGGACATCAGTAGAAGAATCCCTGAAATTTCGTGCGATAAACGTCCTGGAGGAAAACTGTCGTTTGCAAGCGGTATTGCCAACGCTTTTTTCAAGCCAACCATCGATACAGAGGGCGAATTACTTGTTAAACGACTCGAACAGGCTGAACTCGACGACATCGATGAATTTGCAGCCCCGCCAAAGGAAAACATCCCTCCGGAAGTGCAATTATACTCATGTTCCACCTGCAACCTGTCTTTCCCCTTCGAGGAGCGACTAAAATTCCACGAGCGCTGTCACTCGAACACGCGGATGACCTGCGACATTTGCCAGAGCTCGTTCAACACCGAGCAGAAGCTCTACCATCACTATCAGCGCTGTCACGCCGAGTCGTTGGCGTTTTCGTGCCTGCAGTGCGGCAAAGGCTTTCCGGAGGTGGCGGCACTCCGTGCGCACCGATGTGCCGACTGGAAGCCGCGGAAATACGTGTGCGGAGAGTGTGACAAAGGCTTCTCCCAGAGCTACGCGTTGAAGCGCCACGTAGTCACGCACCTTGCGGAAAAGCCCTTCAAGTGCGGCCAGTGCCCGAAGAGTTTTACACAGAAATCACGGCTGAAGAAGCACGTCACGAGCCACGGCGTCGTCCCGGCGTCAAATCAACGCTGCTGGAAGTGCTCTGCGTGTGGTCGAATCTTTCCGAGCCGTGAGGAAGGCGCAAATCACGTTATATCCCACGGGAATGTCCCGATTATAGAGGAATCTACGAGCAAGCTGTTTCACTGCGAGTTCTGCAACAGTTTCTTCTGCGCCTCGTGCTCCAGGGACTTTTCCGCCTCCTCGGAAGCTATTCTCCACTGGAAAAATCATCCGAGTGGCTTCAGGGTTCGCACTGTTTTTGTCTGCAACGTTTGTGACCGCGAATCCACGGAATTAACGCAACTCATCAAGCACCGACGCAGTCTTCGGCACTTTCGGCTCAGGCTGGACGTCACCGGCATGAAAAAGTATGTTTGCGAGCTCTGTGGTGCGGTTTTCAGTGAGGAACATGAAATTTTAGGTCATGGAAAAGGCACAGAGTGTGCGAAATTTTCGTGTGACATTTGTGGAAGTCATTTGTCGACAGAAAATTCACTGCAGGCCCACAAAAGACGTCACAATGGTCTTCTTCCATATGTTTGCAATGTTTGTGGCAAGAGTTACTCGCAGTCTAGCCATTTGCGAACACACAAAAGATTTCATTTAGATGTTAGACCGCATGCCTGCGAATTTTGCGACGCTAAATTTGCAATTAAGCACGATCTTGCCGATCACACGAGAACAAAGCACACGAAAGAACGTCCGTTTAAATGTGAGGTTTGTGATAAGTGCTTCCTCACAGGATCTGTGTTTTATCAGCATCGTTTAATTCATCGAGGCGAACGAAGATACAAGTGTAATTGTTGTGACAGAAGTTTTGTCCGAGCGGGAGCACTGAATAATCATGTGAAAATTCACACTGGAGAAAAACCACATGTTTGTAGTGAGTGTGGAAAATGCTTTCGACAAAAGGGAGATATGCGAAAACATATGCGAACACAGCATACTGgcaattga
- Protein Sequence
- MSWESPSALINSKNVENLEITDASHKSKTPELIALDSYPSNISIYIYSDFGESLYVDEQVTNPPSISESLTITEKEFFLECSKGMEIPADFQCPSNATESKILDISRRIPEISCDKRPGGKLSFASGIANAFFKPTIDTEGELLVKRLEQAELDDIDEFAAPPKENIPPEVQLYSCSTCNLSFPFEERLKFHERCHSNTRMTCDICQSSFNTEQKLYHHYQRCHAESLAFSCLQCGKGFPEVAALRAHRCADWKPRKYVCGECDKGFSQSYALKRHVVTHLAEKPFKCGQCPKSFTQKSRLKKHVTSHGVVPASNQRCWKCSACGRIFPSREEGANHVISHGNVPIIEESTSKLFHCEFCNSFFCASCSRDFSASSEAILHWKNHPSGFRVRTVFVCNVCDRESTELTQLIKHRRSLRHFRLRLDVTGMKKYVCELCGAVFSEEHEILGHGKGTECAKFSCDICGSHLSTENSLQAHKRRHNGLLPYVCNVCGKSYSQSSHLRTHKRFHLDVRPHACEFCDAKFAIKHDLADHTRTKHTKERPFKCEVCDKCFLTGSVFYQHRLIHRGERRYKCNCCDRSFVRAGALNNHVKIHTGEKPHVCSECGKCFRQKGDMRKHMRTQHTGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -