Basic Information

Insect: Macrocentrus cingulum
Gene Symbol: -
Assembly: GCA_002156465.1
Location: MVJL01007320.1:3728-6254[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 2.1 9.1 0.4 6 21 12 27 7 28 0.88

2 14 0.3 41 5.0 0.0 2 20 34 52 33 54 0.92

3 14 3.4 4.6e+02 1.7 0.3 1 12 213 224 213 233 0.87

4 14 0.0016 0.22 12.2 2.2 1 23 316 338 316 338 0.98

5 14 6.1e-05 0.0083 16.6 0.1 2 23 342 363 341 363 0.98

6 14 0.00016 0.022 15.3 4.2 1 23 372 394 372 394 0.98

7 14 0.022 3.1 8.6 0.4 1 23 413 434 413 434 0.88

8 14 0.0013 0.17 12.5 0.0 2 23 440 461 439 461 0.95

9 14 2.6e-05 0.0035 17.8 4.8 1 23 494 516 494 516 0.99

10 14 1.1e-06 0.00015 22.1 3.7 1 23 522 544 522 544 0.96

11 14 5.9e-05 0.0081 16.7 5.3 1 23 550 572 550 572 0.98

12 14 8.5e-06 0.0012 19.3 0.9 1 23 578 600 578 600 0.98

13 14 0.00011 0.015 15.8 0.1 1 23 604 626 604 626 0.98

14 14 6.9e-05 0.0094 16.5 0.1 1 23 634 656 634 656 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	2.1	9.1	0.4	6	21	12	27	7	28	0.88
2	14	0.3	41	5.0	0.0	2	20	34	52	33	54	0.92
3	14	3.4	4.6e+02	1.7	0.3	1	12	213	224	213	233	0.87
4	14	0.0016	0.22	12.2	2.2	1	23	316	338	316	338	0.98
5	14	6.1e-05	0.0083	16.6	0.1	2	23	342	363	341	363	0.98
6	14	0.00016	0.022	15.3	4.2	1	23	372	394	372	394	0.98
7	14	0.022	3.1	8.6	0.4	1	23	413	434	413	434	0.88
8	14	0.0013	0.17	12.5	0.0	2	23	440	461	439	461	0.95
9	14	2.6e-05	0.0035	17.8	4.8	1	23	494	516	494	516	0.99
10	14	1.1e-06	0.00015	22.1	3.7	1	23	522	544	522	544	0.96
11	14	5.9e-05	0.0081	16.7	5.3	1	23	550	572	550	572	0.98
12	14	8.5e-06	0.0012	19.3	0.9	1	23	578	600	578	600	0.98
13	14	0.00011	0.015	15.8	0.1	1	23	604	626	604	626	0.98
14	14	6.9e-05	0.0094	16.5	0.1	1	23	634	656	634	656	0.97

Sequence Information

Coding Sequence: ATGGGCTCGTCGCATCTCGCTTGTCCGATGTGTTGCGGCGAGACATTCAACAATTCTCAATCACTTAAATATCATTTGCTCAGCATGACTGACAATATTTATTGCCCGGTGTGCTCACAAAGATCTGATTCAGTCGATGCACTTATCCAGCATCTCGATAAATGCGGACAAGAACTCAAATCCAATgaggatttattcaaggtcgaGGATAGTGAAGTTTTAATGGACACTGGAGTGGAGGAAATTACCGATGGTTTTCTTACAACCGTTGAAAATGACGGAATCATGATAGTTAATGGCCCACGAACAATAGAAGTCGATGAGCACGgCTCAATAAAAGTCGTGACCGTGGACGATGACAATTCCAAGCTGGATGATCCGCTAGAATCAAACCTGGATTTTGAAAAAGTCGGCGAGGAGTCGACACCAGTGATAAGCATTCCCGATTCGGCTTTGGTTGGCGCCGAGGACAATGATATGATGTCCATTTTACCTGATGAGTCgtcggaattttttgaaaccgatgaaaattttattgagatcAAGCAGGATCTGGACATGGATGAGGAGGAATTAAGGAAGGTTAAACAAGATCTCTGCGAGGTAAACGAAGACGAGgTGGATTCTGCCGCAGTCTACAACTGCAGCAGTTGCAGTATGAGCTTCAACTCGGTGCTGGAGCACATCAAGCAGTATCACGACGGTCAGGAGGTAGTTTTGGAGATGGCAGACGAGCTATCAGAGCCGAGCGAGGAGGTCAAGCGCCCCAAGCCGTCAATGAACACGTTGCGCACGGAAGAATGTGTTGACAGCGAGGGTCGCGTATACACGCGCAAAGTTGTGCAAATCGAGCGCTTCTGGGACAAGCGCACAAAGCCATCGTCAATgatcgagaaatttttctcaaccgACTCGAAACCTCGCTCACAGCCTTCGCAACGGCACTACCGCTGCAGCCAGTGTCTCGAGGAGTTTACGCGCCTCGTGGAATTCCGCACACACGTGTGTGTCCACGGTAGCAACCAGTGCGAGAGTTGTGACAGTGCGTTCGCAACGCCAAAGGCCCTGGCAACTCACATGAAAACCCACGAAACGGACGAGAGTGCGCGCAAGTTCATGTGCACCACCTGCGGCACGCAATTCTCCTCGCACAAGAGTCTTCGTCTGCACTCGCGGATGCATGCTCCCGTGCGCGCACGTCACGTCGATGCGCCCGAGGGCAAGGCCAATGCCACGTTCACGTGCACAGAGTGTGGCAAGGTCCTGAGTGAATTTTACCGCGAGGCACACATGTCCCTGCACGCCGGGGATTCCGTCACTTGCGCTGTTTGCAATCGCAAATTCGACTCGGCCGACAGTCTGGCGATGCACGCCGCTGTTCACCCGGAACTCGGGCTCAATCAGTATCCAAATTGTCCGGCTGCCCCGACCTCGCCCACGAACAGTGCCACGACCGACAGTGGAGATGTTCTGAAGCCCTACCAGTGCCAACACTGCGGTCGCAGGTTCACCAGACCTCACGAAAAAGTCAAGCACGAGCGTATTCACACGGGCGAGAAGCCGCACGCCTGCGAAGTCTGCGGAAAGACCTTTCGTGTCAGCTACTGCCTGACTCTCCACATGCGTACTCACACTGGCGTTCGGCCCTACCAGTGCCAACACTGCGGAAAAAGATTCAAAGCCTCGTCGGTTTATAATCATCACTTGCTCACACACGGCGACGCCCGGGCCTACAAGTGCGGTACCTGcccaaaaacatttaaaacacGGGTTCAATTGGCAGGTCATAAGAATAGTCACACCAAGCCGTTTCGTTGTACTGAGTGTTCGCGACCGTTTGCCTCGCTTTATGCCGCTCGTGCGCATATTGAGACGCATAAAAAggataataatttgaaatttagttGTAATATTTGTGGTGCATCGTATGGACGGGCTTTTGCCCTGAAGGATCACTTGAAGGCACATGCCAATGCGGCCCCCGAGCCCGCGCGAGAGGAGGAAGTCGCGGAGAACTTGTTCCTcgaggaggaagaggaagaggaggaggaggaggaggaagatGTTGAGACAGTTGTCGTCGAGGGACAAttgtgttga
Protein Sequence: MGSSHLACPMCCGETFNNSQSLKYHLLSMTDNIYCPVCSQRSDSVDALIQHLDKCGQELKSNEDLFKVEDSEVLMDTGVEEITDGFLTTVENDGIMIVNGPRTIEVDEHGSIKVVTVDDDNSKLDDPLESNLDFEKVGEESTPVISIPDSALVGAEDNDMMSILPDESSEFFETDENFIEIKQDLDMDEEELRKVKQDLCEVNEDEVDSAAVYNCSSCSMSFNSVLEHIKQYHDGQEVVLEMADELSEPSEEVKRPKPSMNTLRTEECVDSEGRVYTRKVVQIERFWDKRTKPSSMIEKFFSTDSKPRSQPSQRHYRCSQCLEEFTRLVEFRTHVCVHGSNQCESCDSAFATPKALATHMKTHETDESARKFMCTTCGTQFSSHKSLRLHSRMHAPVRARHVDAPEGKANATFTCTECGKVLSEFYREAHMSLHAGDSVTCAVCNRKFDSADSLAMHAAVHPELGLNQYPNCPAAPTSPTNSATTDSGDVLKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDARAYKCGTCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIETHKKDNNLKFSCNICGASYGRAFALKDHLKAHANAAPEPAREEEVAENLFLEEEEEEEEEEEEDVETVVVEGQLC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -