Mcin009584.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01005541.1:7342-11815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00031 0.043 14.4 2.8 1 23 354 377 354 377 0.95 2 19 0.031 4.2 8.1 0.5 2 23 420 441 419 441 0.94 3 19 0.082 11 6.8 4.8 1 19 507 525 507 529 0.93 4 19 0.0038 0.52 11.0 0.5 2 23 533 554 532 554 0.97 5 19 1.3e-05 0.0018 18.7 1.1 1 23 605 627 605 627 0.98 6 19 0.00061 0.083 13.5 0.2 1 23 632 654 632 654 0.97 7 19 0.00018 0.025 15.1 1.2 1 22 660 681 660 684 0.91 8 19 0.00026 0.036 14.6 1.7 2 23 756 777 755 777 0.96 9 19 7.5e-05 0.01 16.4 5.2 1 23 829 851 829 851 0.97 10 19 0.00018 0.024 15.2 0.7 1 20 856 875 856 877 0.94 11 19 0.031 4.2 8.1 0.2 2 23 888 909 888 909 0.97 12 19 7.1e-06 0.00096 19.6 0.3 2 23 948 969 947 969 0.97 13 19 1.6e-05 0.0021 18.5 1.5 1 23 974 996 974 996 0.95 14 19 9.2e-05 0.013 16.1 1.1 1 23 1002 1024 1002 1024 0.97 15 19 1e-05 0.0014 19.1 0.3 3 23 1043 1063 1042 1063 0.98 16 19 9.2e-07 0.00013 22.4 0.3 1 23 1069 1091 1069 1091 0.99 17 19 1.3e-06 0.00018 21.9 0.2 1 23 1097 1119 1097 1119 0.98 18 19 0.00094 0.13 12.9 7.9 1 23 1125 1147 1125 1147 0.96 19 19 0.0078 1.1 10.0 0.5 1 20 1153 1172 1153 1174 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTAGATATTGACACGTCCGAGCCGCAACAAAGTGATGAAGATCCTGTGGAATCAACAGTGCACGTCTGTCGTGTCTGCTTGTTGAGTAATCTCATCATGCGCGACCTTTTCGCAGACGGCGATCTCACATTGTCAGCCAAAGCCATGAGCTTTAGCAGTGTAAAGATGCTGCCAGGCGATGGCTTGCCAGGCCAAGTATGCTGTGAGTGTGCCGACAAGCTCGAGTCGGCTTATGAATTCAAATTGCAGGTCGAGCAGGCAGACAGTGTTCTGCGCGAACGCTACGACAGCTTGAATATCAAAGCTGAGTTGTTTTTCAACGAGGTTGAGGTGCATTTGGAGACTGACAGGCCGGAAGATGTGTCAGAAATGGATGTTACTTCGCAATACGAGGCTGCTGCCGCTGTCCTACAGTCAGAGGTAAACAGTGCCAAGACAAACACGCTGCTAAAAGACCACCTGGCGCTGCTGCATGTCGAGAAGCTCTCTCATCACGAGCAGCGTGTTCTAGAGCACGCGCACATGGTCGCCGACGACGGTGTCATTCGCGATCATATCCTGCAGGAAGGCGAACAGTACATCGAGGATCCTGAGCAAAACGACGAGCAGATGCTGGCCGACGAATTGGAATCGGGCGAGTGCAGCGCCGACGAGCAGATCAAGTCGGAGGTAATGCAAGATGCGATCAACGTAGCGGAGCATAATTACATTGTTCAGCAGGAATACGCATTGTCGAACGAGCAGGAGCAGGAACTGCTGAACGAGGAGAATGTCCCGACAGACACTGACCCGACGGAATATCTGTCTTTAATTGATGACCAAGAAATGGTAGCTAAAAATGAgcatcatttgaaaaaacaggATGATGGATGTGTCGTGAATGAGGATTGCGAGCTGGAGAACAACcggcaaaatttgaaaattgaatgcaCGTTGCCACAGCAAAATTGTCCATCCGAGCCGGCTTTTGATGAGGAAAATTACTTTGAAAACCTTAATCTCAGCAGTAGATTGAGTCAATACCAGGAGGAAAAATCCAACAGAGTTTTTTTCATGTGCTATCTGTGTGACAAGCAATTTCGATCGAAGGACGTGCTTAAGGAGCACATGCTACACTCGCACGAGGAAGTACGGCAGACAATATGCTTGAAGAAGAGTACGGAAAAGGTGCAGAAAAACCCGGTTTCACCGCCAAAAGtgtcgccgccgccgccgccgccgctgcCGCCATCTGGGAAAAAGCCCAACAAATGTCCTTACTGTGGAAAGGAGTATCTTTACGTTATTTCTTTCAATAAGCACGTAAAGCAACATCAAAAAAACGAAGAGCCACCGAAGGAGGTTGTAGACACTGTCAACCATGCCGAGGATTCCATGGGTTCGGATGGTTTTGACGATAATTCAACGTTCGAAGTTATCACGACAATGAAGAAAGAGCCAACGGATGACGTTAGAGCGGAGAAAAACCGTGATGCAAGTCCCAGCAAGAAGCGTCGACgattagaattttattcttgtgaaaaatgcagtgaaaattttcacacgcAGCAAGATTTAAGCCGACACTGTGCTCAGCATCTTTCTCTAAAGTGCAATATCTGCCTTGAGGAATTTTATGGCATGGAAAACTTGCGCAATCATCGAACAACACACGTGATGGAGGGTGTAATTTCTGAGCAAGAAGTCAAGGAAGAGCTTGCAGAACTGTGCAACAGTAATTTTAACTCTGTAAAACAGTCGATGGAATTATCGACAGAGAGTGTTACGATTCCCAACAACTTGGGGAGCGAGGAGGCCTATGAATTCAAGTGTCCCTATTGCTCGCTGGTGTTTAACAGCGAACACACCCTGGCAAAACATCAGATAATACACGAAACAGTTAGATACAGATGTAAAATATGCGCAGCTGAATTTACGGAGAAGGATCAGCTGCAGGAGCACGCGAACCAGCACTCGCCAAATAAGATCTTCAAGTGTACCGAGTGCAGCAAAGTTTTTGCCAACGAGTTGACCCTGAGAAACCATCTTTTCACGACGAATCATAAAACAATCCTTCAAGGCGAGGAGTACAACCCGAACAAGCGATTAAAACGCAATGCGGCCAAAGCAGCTGAGAAAATCATCGATCAAATCAGCACAGATGCCGGCCTGGACGACTCTGACAAGGAGGCCGACAAGGACGAGTTCACTGcggaggaaaaaaagtcaGAGAGGCTGCAGGGATCATCGCGAAAGCTCAGCAGCAAGAGGGACCTTGAGTGCGGCATTTGCGGGAAGAAATGCATCTCAAAACACGCCCTGGGAAAGCATATGGAGTACCACATGAACACGATAAAACCCGAGCAggaaaatgagaagaaaataaGCGACATAAAAACCTCGCCAAAGAGTTGTGCCGACCGATTCCTCGACGACGATtccgacgacgatgacgacaaCAATTTCAACAGCGGCATGGACTGGCCACTGGACAATCACGAGTGCAACACGTGTAAGAAAAAGTACAGCACGAAAAAATCACTGATGCGACACCAACTGTTACACGAGGATCCGAACTTTGAGTGTGACATTTGCAACGTTAAATTCTACCGAAAGGACAAGTTAAAAGCACACTACGACAAATGCTCTGAGAAGAATCCGGATCAAGTGAGAAAGTGCAACATCTGCGGCGACGTGTTTGAGAACAATGAAATTCTTCGCGAACATCGATCAATGCACGTGGACGAGGGTCTGATAACAGAGGAGGACCTGCGCGAACTGGAGCCCGGTTCTGAGGAGCGACAACAGGGTGAAAAGGCGGCGCGAAAGCGACGTACAGATATTGTTGGCTTGGAGTGTCCAGAGTGCAACAAGCAGTATACCTCGCGCAAAGGTCTGCTGCGACACATTCAGGTGCACGAGGGCAAGAAATACCTCTGTGAAATCTGTCCAAAGAAGTTTTATCGGCGGGAACATCTGAAAATTCACGTGGCGAAGCACAACATGATTAAACCCTACAAGTGTTCACGCTGTCCCAAGCGTTTTATCAAGGAGGAACAGTTGACGGCGCATTTCGCCAAGCACGACAAGACCTTCAAGAAGGCCAAGGACGCGGAGAGCACTGCTAAGCGCTGGCTCTGCGAGATCTGCTCCAAGAGCTTCACCCAGTCTACAACGCTCGTGGCACACTTGCGAGCTCACAAGGGTATTAAGCCCTACGTGTGCGAAGTTTGCGCGAGACCTTTCACTACGAATGCCTACTTGAAGATGCATATGAGGACCCACACTCACGAACGGCCATATACTTGTCAATATTGCGGCAGAGCGTTCGCACGCGCTGATACCCTTGCTAACCACCTGACTTCGCACACTGGCGAGGCTAAGTACCACTGCAAACACTGTCCAAAGCACTTTCGACGCCTCAAGTCACTCAAGGAACACGTCTACATCCACACTGGCCAGCGACCCTATGCCTGTCCGACCTGCGACCGAAAATTCAACAACAATGGCAGCCGTTACGCTCACAGCAAGCGCTGCAAGCAGAATTTACTGCAGAACCAGGCGAGGCAAGCTCAACCGCTACCGATAGAGCCGGCTGAGCCAGTCGATCCACcccagcagcaacagcaacaacaacagcaacaacaacagcaacaacaacaacaacaacaacagcaacagccCATCAGGATTACTCAAAATGTTGCACCTGGTATGCAGGTCCTCCAATCGAAGAATATAAAAACCATCACCATCACCAGACAACCCGATCAAGTCGCTGGCCATCAGTTGATGCAGCATCAGGAAATTCTCATGCCTCTGATTTTACCGCTCACTGTCACTCTCACCGATGTCGACGAGGAAGTCATCCTCCCCGAAGgcacaaaaatattcacaaccACGTAG
- Protein Sequence
- MDAVDIDTSEPQQSDEDPVESTVHVCRVCLLSNLIMRDLFADGDLTLSAKAMSFSSVKMLPGDGLPGQVCCECADKLESAYEFKLQVEQADSVLRERYDSLNIKAELFFNEVEVHLETDRPEDVSEMDVTSQYEAAAAVLQSEVNSAKTNTLLKDHLALLHVEKLSHHEQRVLEHAHMVADDGVIRDHILQEGEQYIEDPEQNDEQMLADELESGECSADEQIKSEVMQDAINVAEHNYIVQQEYALSNEQEQELLNEENVPTDTDPTEYLSLIDDQEMVAKNEHHLKKQDDGCVVNEDCELENNRQNLKIECTLPQQNCPSEPAFDEENYFENLNLSSRLSQYQEEKSNRVFFMCYLCDKQFRSKDVLKEHMLHSHEEVRQTICLKKSTEKVQKNPVSPPKVSPPPPPPLPPSGKKPNKCPYCGKEYLYVISFNKHVKQHQKNEEPPKEVVDTVNHAEDSMGSDGFDDNSTFEVITTMKKEPTDDVRAEKNRDASPSKKRRRLEFYSCEKCSENFHTQQDLSRHCAQHLSLKCNICLEEFYGMENLRNHRTTHVMEGVISEQEVKEELAELCNSNFNSVKQSMELSTESVTIPNNLGSEEAYEFKCPYCSLVFNSEHTLAKHQIIHETVRYRCKICAAEFTEKDQLQEHANQHSPNKIFKCTECSKVFANELTLRNHLFTTNHKTILQGEEYNPNKRLKRNAAKAAEKIIDQISTDAGLDDSDKEADKDEFTAEEKKSERLQGSSRKLSSKRDLECGICGKKCISKHALGKHMEYHMNTIKPEQENEKKISDIKTSPKSCADRFLDDDSDDDDDNNFNSGMDWPLDNHECNTCKKKYSTKKSLMRHQLLHEDPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDVFENNEILREHRSMHVDEGLITEEDLRELEPGSEERQQGEKAARKRRTDIVGLECPECNKQYTSRKGLLRHIQVHEGKKYLCEICPKKFYRREHLKIHVAKHNMIKPYKCSRCPKRFIKEEQLTAHFAKHDKTFKKAKDAESTAKRWLCEICSKSFTQSTTLVAHLRAHKGIKPYVCEVCARPFTTNAYLKMHMRTHTHERPYTCQYCGRAFARADTLANHLTSHTGEAKYHCKHCPKHFRRLKSLKEHVYIHTGQRPYACPTCDRKFNNNGSRYAHSKRCKQNLLQNQARQAQPLPIEPAEPVDPPQQQQQQQQQQQQQQQQQQQQQQPIRITQNVAPGMQVLQSKNIKTITITRQPDQVAGHQLMQHQEILMPLILPLTVTLTDVDEEVILPEGTKIFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -