Mcin012643.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01011670.1:3799-7196[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-05 0.068 13.0 0.0 5 38 97 130 95 134 0.86 2 2 0.00081 0.71 9.7 0.0 22 38 147 163 144 167 0.89
Sequence Information
- Coding Sequence
- ATGCCAAAAAGACGTGGTTGTAGGGCTGGTTTAAAGGCGGCATTACGCCGTTTGATAAAGGAACACGCGTCGATACTGCCGGTTCTCGAGTCAAGGGAATCACCTCCCTTTAATACTAATCACTCAGGAAAGTCGACCCCGAAATCTCCACCGAGAACTGTAACCAGTTCGGAGGAATTTCCCTTCAATACAGAAATAGTTGTGTTAAAACACATAAAGCCAAGGAGACCGGTCCTAGACCTTCCACCGAGACCAAAAGTTGTCTCAGAGGAAGTCCTCCTTGagttgataaaaaaagctgCCGATGCTGTAATTAACGaaaatcaaaaactaaaagcTGCTGCCAAGGAATTCGACATCTGTCACATGACACTCTATATGTTCgtgaaaaagttaaaatctGGGCAAGAGGCTgctgatacaaaaaaactaaaagctGCTGCCAAGGAATTCGACATCTGTCACATGACACTCTATATGTTCgtgaaaaagttaaaatctGGGCAAGAGGCTGCTGATACAAAAAACGAAGATGGTATTTACCaaggctcaaaaaaaaaaaatgacactcTATATGTTCgtgaaaaagttaaaatctGGGCAAGAGGCTGCTGA
- Protein Sequence
- MPKRRGCRAGLKAALRRLIKEHASILPVLESRESPPFNTNHSGKSTPKSPPRTVTSSEEFPFNTEIVVLKHIKPRRPVLDLPPRPKVVSEEVLLELIKKAADAVINENQKLKAAAKEFDICHMTLYMFVKKLKSGQEAADTKKLKAAAKEFDICHMTLYMFVKKLKSGQEAADTKNEDGIYQGSKKKNDTLYVREKVKIWARGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -