Mcin016460.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01000488.1:10489-13516[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.76 6.7e+02 0.2 0.0 2 15 489 502 488 503 0.87 2 3 8.9e-06 0.0078 16.0 0.0 14 38 524 548 513 552 0.88 3 3 0.042 37 4.3 0.0 25 35 583 593 582 598 0.88
Sequence Information
- Coding Sequence
- ATGGGCGAGTTTTATGTCGGGCTCGGGTGTGATGTAATAGTCTTACTAGAGTCATGGATGGATGAGAGAGGAGTGAGTGCAGAGTGTGGGAAATGGAATGTCAACTACGAATGGAAAGCCCTTCCGGCAACAAAGAGCGCGACAAGGGGACGGGCGAGTGGTGGCATCATAATAGGCATTATGAAACACCTAGCAAAAAAATGCACTCTGCAATGGGGCAATAACGCGGCACGTGTAGAGCTGGCAGAGGCAGGGCAAAACTCggcaaaaacaacaataatttttgtatacgcTAATAAAGGCCACGGAAAATGTGTTGAGACTATTAATCCCTGGATCTACGAGGCAAAAAGAGAGGGAAGGGGCATAGTAGTCATGGGGGACTTTAATGCGCGCACCGGGCAAGCGCAAATAATTAGAAGGGGCAACCAGGGGTTTGTCTGTTGTAGCAAGGCAAGGGAATCGCAGGACACACACACCAACCAGGAAGGTAAGAGATGGCTCAATTGGTGTAGGGACGAGGCACTGAGGATCAGCAATGGCAGCACAGAAGGAGACCGCGAGGGCAAAATCACCTGCACGGCAGCCGAGCACGGATCAGTGATTGATTACGTGCTCGAGGCCTACACCAATGAACGCAAACTCGTCAGCAAAATGGATATACTGGCGAGGCCTGAGTCAGACCACATGCCAGTGGTAGTCACGCTCAACATCAGAGGCGGCGAGCAAGCTCGCAAGCTCAGGCAAAGACCCAAGGCTCGGGAAATAATGTGTTGGGACCCcgacaaaaaagaaaagttcCTTAGCGAGCTAGACAAACTGCACAGGCAGGAGCCTCATTTCACCGGGGAGGAAGGCACGGACTGGGCCTACATCAGCATGGCTATCAAGGAAGCCGCCGACCTGGCAGGGATGCCCAAGAGGGAAGCCGCCGACCTGGCAGGGATGCCCAAGAGGGTCACCCCGGGGGGAAACAAAAGGTCATGGTACGACCAAGAGAGCAGGGCGAGGCGCCAGGAGGTCTGGGGACTACTAAAGGAGTTCCTCAAGCACAGAACACCGGAGCACAAGCTCATCTGGCGCGTGGCAAAAAAAGGACAAGAGGGTCACCCCGGGGGGAAACAAAAGGTCATGGTACGACCAAGAGTGCAGGGCGAGGCGCCAGGAGGTCTGGGGACTACTAAAGGAGTTCCTCAAGCACAGAACACCGGAGCAGAAGCTCATCTGGCGCGTGGCAAAAAAAGGCTACGAGGGATTGtgcagagaaaaaagaaaagagaTAAAGGAGTTCCTCAAGCACAGAACACCGGAGCAGAAGCTCATCTGGCGCGTGGCAAAAAAAGGCTACGAGGGATTGtgcagagaaaaaagaaaagagaGGAACGACGTAGTAGCCATTCTTCCTTCTGTGGCAATGTCTGGTCCGGCGGAATctgtagggaaaaaaaaataaaggcgTGGGGTCCAAGTGACATGGAGAAGGCTATTTGTGCGGTGCGACAGGGACTTTTTAATCAATACAGCGTAGTAGCCATTCTTCCTTCTGTGGCAATGTCTGGTCCGGCGGAATctGGGGAGAtgggctataaaaaagctGTGAAGCGTTTCAACGTACCGAGAACGACGCTGCGGCGCCTTGCTAATGGAGAAGGCTATTTGTGCGAACGACGCTGCGGCGCCTTGCTCACCACGACCCGCAAGAGTCGATTGCGGCAATCGTCCGGAAGCCACTGGGGCACTGTGAAGCGTTTCAACGTACCGAGAACGACGCTGCGGCGCCTTGCTCACCACGACCCGCAAGAGTCGATTGCGGCAATCGTCCGGAAGCCACTGGGGCGAAGGCCAAGAGTACCTCGTGAATTGGCGAGAGCAGCAGCAACACCACCAGCATCAGCAGCACCAGTACCAGTACCAGCAGCAGCACTAggggcagcagcagcaccatcaccaccaccaGTACCAGCAGCAGTAACAGCACTAGCAACACCAGCAATACCAGCAGCATCAGCAGCACTAggggcagcagcagcagcaccaccaCCAGCACCAGCAACAGCACCAGCAACAGCACTAGCAACACCAGCAACACCAGCAGCACTAATACCAGTactagcagcagcagcagcagcggcacCAGCAGCAAACACCAGCAACAGCACCAGCAACAGCACTAGCAACACCAGCAACACCAGCAGCACTAATACCAGTactagcagcagcagcagcagcggcacCAGCAGCAACACCAGCACCAGCACGAGTACCAgtaccagcagcagcagcaaacgAGGAATATGA
- Protein Sequence
- MGEFYVGLGCDVIVLLESWMDERGVSAECGKWNVNYEWKALPATKSATRGRASGGIIIGIMKHLAKKCTLQWGNNAARVELAEAGQNSAKTTIIFVYANKGHGKCVETINPWIYEAKREGRGIVVMGDFNARTGQAQIIRRGNQGFVCCSKARESQDTHTNQEGKRWLNWCRDEALRISNGSTEGDREGKITCTAAEHGSVIDYVLEAYTNERKLVSKMDILARPESDHMPVVVTLNIRGGEQARKLRQRPKAREIMCWDPDKKEKFLSELDKLHRQEPHFTGEEGTDWAYISMAIKEAADLAGMPKREAADLAGMPKRVTPGGNKRSWYDQESRARRQEVWGLLKEFLKHRTPEHKLIWRVAKKGQEGHPGGKQKVMVRPRVQGEAPGGLGTTKGVPQAQNTGAEAHLARGKKRLRGIVQRKKKRDKGVPQAQNTGAEAHLARGKKRLRGIVQRKKKREERRSSHSSFCGNVWSGGICREKKIKAWGPSDMEKAICAVRQGLFNQYSVVAILPSVAMSGPAESGEMGYKKAVKRFNVPRTTLRRLANGEGYLCERRCGALLTTTRKSRLRQSSGSHWGTVKRFNVPRTTLRRLAHHDPQESIAAIVRKPLGRRPRVPRELARAAATPPASAAPVPVPAAALGAAAAPSPPPVPAAVTALATPAIPAASAALGAAAAAPPPAPATAPATALATPATPAALIPVLAAAAAAAPAANTSNSTSNSTSNTSNTSSTNTSTSSSSSSGTSSNTSTSTSTSTSSSSKRGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -