Mcin005973.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01001996.1:6253-6693[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2e-10 1.7e-07 30.9 0.0 3 39 14 50 12 54 0.81 2 3 4.3 3.8e+03 -2.2 0.0 25 31 100 106 99 106 0.86 3 3 5.3 4.7e+03 -2.5 0.0 16 22 128 134 125 134 0.81
Sequence Information
- Coding Sequence
- ATGGCCAgtgaaaccaaaaaaaaaggacagtGGACCaaagaaaatttggaaaatgcAGTCCTGactgttggaaataatttatctatccATAAAAGTGCAAGTATGTATGGTGTTCCGTACAGCACTCTACGTGACAGactaaaaaatggatttactTCTGGACCTGAGTTGGGTCGTAAGActatttcaacgaaaaaacaagaagaggacacgtgtgaaaaaattaaaaaactctccaatttattttatggacTAAAACGATCAGAAATCTGTGAGGCAGCATTCAAATTCGTGGAGATCCATAATATTCCCCacacaattaataaaacaacgGAGACTGCAGGTCGTGCATGGTTTAATGGCTTTATGAAACGAAATCCATCCCTTTCTCTGCGAAAAGCTGAAGCTACAAGTTTGAATCGTGTAACAGCCTTTAGTTAA
- Protein Sequence
- MASETKKKGQWTKENLENAVLTVGNNLSIHKSASMYGVPYSTLRDRLKNGFTSGPELGRKTISTKKQEEDTCEKIKKLSNLFYGLKRSEICEAAFKFVEIHNIPHTINKTTETAGRAWFNGFMKRNPSLSLRKAEATSLNRVTAFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -