Mcin006348.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01007463.1:16442-17985[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-11 8.7e-08 31.9 0.0 5 35 71 101 70 109 0.87 2 2 0.6 5.3e+02 0.5 0.0 31 42 122 134 121 136 0.90
Sequence Information
- Coding Sequence
- ATGTCTACAGTTATTGTAGGTGAAGGAGCTTTACTAGCAAAAATTCTAACAAGACAAAACAACTATACTATGTACGGAATTTACATCATGGAGTCATGGAAAgaagaagaagaagaagaagacgacgaaaaaaacgaagaagGAGATACAAACTTTTTCCCGTTCCCTCCTCTAGCAGTTAAGTACCATAAAAAGTATGATGGGCCAAATATTCAAAAAGCAGTAGACGACATAAAAGGAGGCATGAGCCAGTACCAAGCGTCAGCAAAATTTGGCGTTCCGCGATCCACTTTGCAGTTTCGCTTGAGTGATAGGTTCACCAAGGCTTCACCGGGTCCATCACCGATTTTAACATCAACTGGACCCACCCTATACCGGAGTTTTTTGAGGAGACACCCTACATCGGTGGAAAGATATCCAGAAGGAGTATCGAGCCGAAGTTTAAATGTGAGTGAAGCAGATATtcgtaaattgtttttccaaaTTACTGATTATCTACGTGAGAACAATTATCTCGAGATTATGGAGGATccatcacgaatttttaacagCGATGAAACTTATTCCAATGTCTGTCCTAAATTGAGGAATGTATTAGCACCTCGAGGTTCTCGCAATGTGTATAAGGTCGAGAGAAGAAATACAAAGTTAAATCTAACAGTGTTATTGACATTTAGTGCTCACGGTGTAACAACTCCACCTACGATCGTGTATCcttacacaaaaaatttttcaatagtcTCATCATCAGTACCCGATCATTGGGGCATTGGTGTGACACCTCGGGGCTGGATGAACGAAGAACTTGTTaccgaaacaaaaaatttttcaatagtcTCATCATCAGTACCCGATCATTGGGGCATTGGTGTGACACCTCGGGGCTGGATGAACGAAGAACTTGTTACCGAATATTTGAGTGAAATATTCCATCCTTTTTTGGTTGAGAAGACTTTCCCAATCATTTTGTTCGTTCATGGCCACAGTAGCCATCTGACGTTAAGAATCCACGAAATGTGTGTCAAATTGGAAATTATTATCATCTGCCTCTACCCAATCATTTTGTTCGTTCATGGCCACAGTAGCCATCTGACGTTAAGAATCCACGAAATGTGTGTCAAATTGGAAATTATTATCATCTGCCTCTACCCAAATTCAACGAGGATATTGCAGCCGGCCGATGTCTCTGCATTTAAACCTctgaaaaattgtggaaaaaggCTTTCATCAAATGGAGACAGAATAATGTTTCAACCAACTTAA
- Protein Sequence
- MSTVIVGEGALLAKILTRQNNYTMYGIYIMESWKEEEEEEDDEKNEEGDTNFFPFPPLAVKYHKKYDGPNIQKAVDDIKGGMSQYQASAKFGVPRSTLQFRLSDRFTKASPGPSPILTSTGPTLYRSFLRRHPTSVERYPEGVSSRSLNVSEADIRKLFFQITDYLRENNYLEIMEDPSRIFNSDETYSNVCPKLRNVLAPRGSRNVYKVERRNTKLNLTVLLTFSAHGVTTPPTIVYPYTKNFSIVSSSVPDHWGIGVTPRGWMNEELVTETKNFSIVSSSVPDHWGIGVTPRGWMNEELVTEYLSEIFHPFLVEKTFPIILFVHGHSSHLTLRIHEMCVKLEIIIICLYPIILFVHGHSSHLTLRIHEMCVKLEIIIICLYPNSTRILQPADVSAFKPLKNCGKRLSSNGDRIMFQPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -