Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.25 2.2e+02 1.8 0.0 2 15 27 40 26 47 0.89

2 3 7e-07 0.00061 19.5 0.0 2 30 60 88 59 89 0.94

3 3 0.00012 0.1 12.4 0.0 2 26 92 116 91 117 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.25	2.2e+02	1.8	2	15	27	40	26	47	0.89
2	3	7e-07	0.00061	19.5	2	30	60	88	59	89	0.94
3	3	0.00012	0.1	12.4	2	26	92	116	91	117	0.90

Coding Sequence: CGTAGTAGCCATTCTTCCGTCTGTGGCAATGTCTGGTCCGGCGGAATctgtagggaaaaaaaaataaaggcgTGGGGTCCAAGTGACATGGAGAAGGCTATTTGTGCGGTGCGACAGGGGGATGGCAATGTCTGGTCCGGCGGAATctgtagggaaaaaaaaataaaggcgTGGGGTCCAAGTGACATGGAGAAGGCTATTTGTGCGGTGCGACAGGGGGAGAtgggctataaaaaagctGTGAAGCGTTTCAACGTACCGAAGGCGTGGGGTCCAAGTGACATGGAGAAGGCTATTTGTGCGGTGCGACAGGGGGAGAtgggctataaaaaagctGTGAAGCGTTTCAACCCACTGGGGCGAAGGCCAAGAGTACCTCGTGAATTGGCGAGAGCAGCAGCAACACCACCAGCATCAGCAGCACCAGTACCAGTACCAGCAGCAGCACTAggggcagcagcagcaccatcaccaccaccaGTACCAGCAGCAGTAACAGCACTAGCAACACCAGCAACACCAGCAGCATCAGCAGCACTAggggcagcagcagcagcagcggcacCACCAGCACCAGCAACAGCACCAGCAACAGCActagcaacagcagcaacaccAGCAGCACTAATACCAGTactagcagcagcagcagcagcggcacCAGCAGCAACACCAGCACCAGCACGAGTACCAGTACCAGCAGCAGCATCAAACGAGGAATATGAGGAGGcggacgatgacgacgacgaggagAACGACTACGATGAGGAagacgaggaggaggaggaggggGACGAGAAGGACGAGAAGGACGACGAGAAGGACGACTATGACGAGGCGCTGATCGGCTCTAGGAGACCTAAGAATCTAAATGCGTGCTGCATGTTCTGCGACACAATCGTTGCAGAGGACAAGCCTGGTGAGAGTTGA
Protein Sequence: RSSHSSVCGNVWSGGICREKKIKAWGPSDMEKAICAVRQGDGNVWSGGICREKKIKAWGPSDMEKAICAVRQGEMGYKKAVKRFNVPKAWGPSDMEKAICAVRQGEMGYKKAVKRFNPLGRRPRVPRELARAAATPPASAAPVPVPAAALGAAAAPSPPPVPAAVTALATPATPAASAALGAAAAAAAPPAPATAPATALATAATPAALIPVLAAAAAAAPAATPAPARVPVPAAASNEEYEEADDDDDEENDYDEEDEEEEEGDEKDEKDDEKDDYDEALIGSRRPKNLNACCMFCDTIVAEDKPGES

Sequence clustering based on sequence similarity using MMseqs2