Mcin002914.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- lola_1
- Assembly
- GCA_002156465.1
- Location
- MVJL01001130.1:11562-18083[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-15 1.9e-12 46.8 0.0 2 42 371 412 370 415 0.94
Sequence Information
- Coding Sequence
- ATGTCCATGGAGCAATTTTGTCTGCGGTGGAATAATCATCAACCGAATTTTATCTCAGTATTTTCAACATTGTTGAGCAATGAGGCTTTAGTGGATGTTACTCTTGCTGCTGAAGGCAGACATCTTCAAGCCCACAAAGTCGTGCTGTCAGCTTGCAGTACATATTTCCAATCTTTATTCACTGTTAATCCGTGTCAACATCCTATTGTTATTCTTaaagatgtaaaattttcgGATTTGAAGATAATGGTGGATTTTATGTACTATGGTGAAGTTAATGTATCTCAAGAACAATTACCTGCAATTATAAAgACAGCTGAGAGTTTGAAAATTAAGGGATTAGCTGAAATGCACACAGCGTCATTAACCAAGTGGCCAAGCGGTAGCAGTGAACCAAGTGGTGGTGATAGAGGTGAATCTTGCTCTCCTGGTCCGTCTCCCCTGTCTCCGTCGTTCCGACGAAAACGACTGAGGAAAGTGTCGACTGGCTCGACGTCTGGATCAATGGACAAACTTGAGGAAGTCAATGAAATTACACTAGTAGCCACAAATATTGTGAAACCAGAGCTGCAAATACTCTCGCAATCGGGCAGTAATTCTAGACGTACTGGAACTGTCACCACAGATTCTCAAGGAAGTATCGACGAAGACGAAATATCAATTATTAGTAACATGGAAACTCGATCAACAGCTACACCTGCACAAAGTGATACTCCGATACAGGAAGTGAGTCAGCAATCGGGAGTACATACAGGACAGAGTTCACATACTTCGCAAGGTCCAACGCATCAAGGATTGCAATGGACAATCATGGAGCATACGTATCCACGTTTCGCTCTATCCTCGTGTCAAACGAATCTGTCGGTCCAAGCATCATCGGCATTCACATCGCCTGAAATAACGGCGGCATCAAACATCGGCGAACAGTACTCGGGTGCCAACACCACTGGCTCTAGTTGTGCATTGACCAACTATTCCAATTCATCGCATGGGTCTGTTCAGTATTCATCACCCGGCGGCGTATCGCCGCAATGTTCTAATAGCTGTCCGAGTCCATGCGCCAGTCCACAGGCCACTGTTAAGAGAAAAAGATCAACTAATCCGCAggcagatgaaaattttattcgagcTCTCGATGCCGTGCGTTTTGGTGGAATAGGTTTTTGCAAAGCTGCACGAATGTTTGGTGTTAATAATCGCACGCTTTGGCTGGAATATAAAAAGCGCGGTTATCCAAACACACGACCGAGCGTCAAGTCGCGAGTGAAACAAGAGACAAATTCATCGCCACCGCCGCCAACGTCGTCACAAGCGGCCCAACAGGCCGCACAATCTGGCGATCCACTGGATCCACAGAGTCCAGCTCCAATGGGTCCACCTCCGACTCCTCACAGTCCTCACAATGTCCACAATCCGCACAACATGCTTCCGGCCCACTCATCACATCCAATGCTTTCTCCCTACGTTGACAATAGGCACATTGATTATCCCATTGGCAACTCTACCATGCCTATTAATTTACACGGGGGTAAGCAAATGGAGGCAAAACGTGGACGTTTGCTTTTGATGCGACAGCCTCGCGTGAAAAAGGAAGCAGAACCGGGACACCCATCGCCCGAAAGTGAGCCAGGATCTCGGGTCTCATCGCCTGCAGCACAGGCCGTCATGCCGACCCTGAATCTTCCGTCATCCGTGATTCTTCCGCAACAGTGGCCATCAGAAACTGAACCGCCTGCAGCGGCGTCCAACAAGCAGACTCTCTTGACCGTCACGACATGCACGAATTTATTGACCGTTCCCCAGCCGACTTATCTGGTGAAACAGCACTCTCACCCACTGTTACCTACGCAAAGTTCGTCCTCCAGTTACTGGATGCAACGTCAACACTCGAATCCCGAATATCCCGGCAGATCTGTCAGTCCGGTTGATTCCATTcctcaaataaaaatcgaacAAGGCCACTCAGACTCTCGAGTGTTGAAAGAAAGCTCGGCAACATCGAGCACGGGCTTACGAATCATCCCGGCGGAATTTTTAAGAAGTTCCTCAACACCGCAGTTGAGTTCGGAGAGCAGGACGAGTTCTCGGGAGGGAAGTGGTGATTTACGGCTCGGTCACTGTCCGGTACAACGACCGGGGCCTGCATTGGGCTGCAATCACTGCTGGAACACCGTTGATACTCATGGACGCACGCTGAGACGAAAAACTAAGTATCATTGCCCCGAGTGCCAGATAAATTTGTGCATTGTACCGTGTTTTCAAGAATTTCACGAACGTCAACGTGACAATGCCAGTATAAAAACCCTACCAAAAACTAGCTCAATCTAA
- Protein Sequence
- MSMEQFCLRWNNHQPNFISVFSTLLSNEALVDVTLAAEGRHLQAHKVVLSACSTYFQSLFTVNPCQHPIVILKDVKFSDLKIMVDFMYYGEVNVSQEQLPAIIKTAESLKIKGLAEMHTASLTKWPSGSSEPSGGDRGESCSPGPSPLSPSFRRKRLRKVSTGSTSGSMDKLEEVNEITLVATNIVKPELQILSQSGSNSRRTGTVTTDSQGSIDEDEISIISNMETRSTATPAQSDTPIQEVSQQSGVHTGQSSHTSQGPTHQGLQWTIMEHTYPRFALSSCQTNLSVQASSAFTSPEITAASNIGEQYSGANTTGSSCALTNYSNSSHGSVQYSSPGGVSPQCSNSCPSPCASPQATVKRKRSTNPQADENFIRALDAVRFGGIGFCKAARMFGVNNRTLWLEYKKRGYPNTRPSVKSRVKQETNSSPPPPTSSQAAQQAAQSGDPLDPQSPAPMGPPPTPHSPHNVHNPHNMLPAHSSHPMLSPYVDNRHIDYPIGNSTMPINLHGGKQMEAKRGRLLLMRQPRVKKEAEPGHPSPESEPGSRVSSPAAQAVMPTLNLPSSVILPQQWPSETEPPAAASNKQTLLTVTTCTNLLTVPQPTYLVKQHSHPLLPTQSSSSSYWMQRQHSNPEYPGRSVSPVDSIPQIKIEQGHSDSRVLKESSATSSTGLRIIPAEFLRSSSTPQLSSESRTSSREGSGDLRLGHCPVQRPGPALGCNHCWNTVDTHGRTLRRKTKYHCPECQINLCIVPCFQEFHERQRDNASIKTLPKTSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00938121;
- 90% Identity
- iTF_00938121;
- 80% Identity
- iTF_00938121;