Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.1e-06 0.0028 17.5 0.0 8 40 3 34 1 39 0.81

2 3 1.6e-06 0.0014 18.4 0.0 8 42 36 69 34 72 0.83

3 3 0.00028 0.25 11.2 0.0 25 42 85 102 84 105 0.88

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.1e-06	0.0028	17.5	8	40	3	34	1	39	0.81
2	3	1.6e-06	0.0014	18.4	8	42	36	69	34	72	0.83
3	3	0.00028	0.25	11.2	25	42	85	102	84	105	0.88

Coding Sequence: ATGAAGGCTGTTGAAGAAGCACGCACTGGAAAATGCATAGCCGAGCTGTCACGAAAGTATAATGTGCCTGAATCAACACTTAGAGCAAGGAAAATGGGCAAGAAGGCTGTTGAAGAAGCACGCACTGGAAAATGCATAGCCGAGCTGTCACGAAAGTATAATGTGCCTGAATCAACACTTAGAGCAAGGAAAATGGGCAAAAACGCAGATAAAAAACCCGGCCCAGCGACTGTGATGAGTACGAAAGAAGAGAAGTATAATGTGCCTGAATCAACACTTAGAGCAAGGAAAATGGGCAAAAACGCAGATAAAAAACCCGGCCCAGCGACTGTGATGAGTACGAAAGAAGAGAGAGACTTAGCGGAGTGGCTGTTTTATTGTCATCGACGCGGATTTCCAGTGACCAAGCTACAACTCATGGAAAGTGTGCAGATTCTCTGCCTCAATGATCGTCGTCAAACACCTTTCGCGGATAAAAAGCCAGGACGAAGTTGGTTTGAAGGCTTTCTGACCCGCCATCTTAATGTATCACGGAGAATATGTGAAAATGTTTCACTGAGCCGAGCAAAAGTGTCGGAAATGTAG
Protein Sequence: MKAVEEARTGKCIAELSRKYNVPESTLRARKMGKKAVEEARTGKCIAELSRKYNVPESTLRARKMGKNADKKPGPATVMSTKEEKYNVPESTLRARKMGKNADKKPGPATVMSTKEERDLAEWLFYCHRRGFPVTKLQLMESVQILCLNDRRQTPFADKKPGRSWFEGFLTRHLNVSRRICENVSLSRAKVSEM

Sequence clustering based on sequence similarity using MMseqs2