Mcin001982.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- bab1_1
- Assembly
- GCA_002156465.1
- Location
- MVJL01003062.1:57043-59042[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00075 0.66 9.8 0.0 22 37 218 234 198 241 0.77 2 4 1.1e-11 9.8e-09 34.9 0.0 5 42 252 288 249 291 0.90 3 4 0.51 4.5e+02 0.8 0.0 25 33 322 330 302 334 0.85 4 4 1.8e-10 1.6e-07 31.1 0.1 5 37 363 395 362 400 0.94
Sequence Information
- Coding Sequence
- ATGTGTGAAGTTGCAAGCTCAGCTGCGAGTGAGCAGAGTTTCTGCTTCAAATGGAACGATTACCAGACTCATTTGTCGACCCTGGCACAACAGCTACTTGCAGAGGACTGCATGGTGGATGTGACTCTTTCTGTTGCTGGCGAACGGATTCAAGCTCATCGAATAGTTTTGTGTGCTTGCAGcacattatttcaaGAAATATTGAGCGAGACAACTGAACATCATCCGACCATTATAATAAGTGATCTGGCTGTTCAAGATGTTAAGTCAATTGTTGACTTTTGTTACCACGGAGAGGTGAAAATCCCTGTGGATAATATCGACAACCTGCTGGAGGCAGCGCAAGCACTGAAAATTTATGGATTAATGGAGGTGGAGGGTTTGGATGAGTATGAGAGCCTATCATGCTCTAATGATGACTCAGACACGCTTATTACACAACTACACGATGAATCCACGCCAGCAGATGATAATCCGTGGCCAGagaatgatgatgaaaaatttcccgTACCTGAAAATCCGCCAGAGCCTGAAAAAACGGTGCCAAAACGGTCAAAACGCCGCTCAGAAgggataaagaaaaaaaattacagtgaCGAAATGCTTGAGGCAGCAATGAACGACCTGAGAGCGGGTCAACCGCTCATGGATGCAGctacgaaaaataatgtacCACGATCAACTCTTTACATGCGTGCTAAAGCCTCTGGTGTTCGGGTACAGACAGCTCGCACGGATTATCCGGCTGAATGTCTCAAAGCGGCCATCAATGCGGTTATAAaTGGTTCAAGTTTTTCGCAAGCGTCGGATAGGTACAGAATACCAAAAACTGTATTGTGGAGGCGAATACAGAAGGAGGGACACGTGCTCAAATCGGAAGTAAAAAAGACTTACGACAATGACAAAAGAGAAGCGGCAATTCGGGCACTGGAACGaggtgaaaaattgacaaaagtaTCTTTAGAATTTAAGATACCAAAAACGACATTGTTccgtgataaaataaaattggtcGACGAGGGAAAATTACCCGGGTCATTTTGGAAAAAGAGAAATGTTGAGAATGgagcatcaaaaaaattgcgacTTGAGGAAGCAGTGAGTGCTTGTAAACAAGGAAAAATGTCTCAAGCTGCCGCAGCACTGGCTTATCGTATCCCGAAAACAACAATTTGGCGTCGACTCCATCAGGATAGTCAAATAAAATCCGCTGGTAGGAGTCAAGTGACCaaagaaaaatctgaaatcaataaatcagTCAACATTCACGcagataaaatgaaatgtGCTGAAAATACGACATTTACGTTGTGCgagGTTCCATCAGAAATCCCTATAACGTATATTAACGACAGTAATATTCCAGAAGATTCGGTGATAATTTTAACAACAGAGGACGTTGAAGCCTTGGATTTGGGCGAAAGCAGACAGATAATGGTTAATTCAGTATGTTCAGGACTTTGa
- Protein Sequence
- MCEVASSAASEQSFCFKWNDYQTHLSTLAQQLLAEDCMVDVTLSVAGERIQAHRIVLCACSTLFQEILSETTEHHPTIIISDLAVQDVKSIVDFCYHGEVKIPVDNIDNLLEAAQALKIYGLMEVEGLDEYESLSCSNDDSDTLITQLHDESTPADDNPWPENDDEKFPVPENPPEPEKTVPKRSKRRSEGIKKKNYSDEMLEAAMNDLRAGQPLMDAATKNNVPRSTLYMRAKASGVRVQTARTDYPAECLKAAINAVINGSSFSQASDRYRIPKTVLWRRIQKEGHVLKSEVKKTYDNDKREAAIRALERGEKLTKVSLEFKIPKTTLFRDKIKLVDEGKLPGSFWKKRNVENGASKKLRLEEAVSACKQGKMSQAAAALAYRIPKTTIWRRLHQDSQIKSAGRSQVTKEKSEINKSVNIHADKMKCAENTTFTLCEVPSEIPITYINDSNIPEDSVIILTTEDVEALDLGESRQIMVNSVCSGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00938140;
- 90% Identity
- iTF_00938140;
- 80% Identity
- iTF_00938140;