Mcin018653.1
Basic Information
- Insect
- Macrocentrus cingulum
- Gene Symbol
- -
- Assembly
- GCA_002156465.1
- Location
- MVJL01005673.1:7199-9153[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-09 2e-06 27.5 0.1 17 45 1 30 1 30 0.93 2 3 3.6e-12 3.2e-09 36.5 0.0 7 33 35 60 34 61 0.97 3 3 3.6e-15 3.1e-12 46.1 0.0 1 35 62 96 62 100 0.94
Sequence Information
- Coding Sequence
- ATGTCACAATGTAAAGCTGCGAAAGCCTACAACATCCCGAAATccacattaaaaataatggcTTCGAATAACAGACCATCAACGAGCAATATCGAGTGGCCAAGAGCAATCGATGCAGTAAATAGTGGGATGTCACAATGTAAAGCTGCGAAAGCCTACAACATCCCGAAATCCACATTAAACGATGAGGAAACAATTAAAAGAGCAATCGATGCAGTAAATAGTGGGATGTCACAATGTAAAGCTGCGAAAGCCTACAACATCCCGAAATCCACATTACAATTTCGAATGAGTGACAAATTCGTGAAAACGTCTCCTGGGCCTGCTCCCGTGTTGACATACGACGAAGAACAAACATTGGTAAAATGGATACTCCATCGTAAAGGATTTCCTAGACGTAAAGAGGACCTCCAAtctagcataaaaaaatttttggacgaAACCGAGCGTGAAACACCATTCACTGACAACATTCCGGGCGAAGGATGGTACCGTGCTTTTCTCAAGAGACATCCAATTTTGTCAGAAAGATACCCCGAAGGAGTAACAAATGCCAGTGCCAATGTAAGTGAAAAGGATATACGTAATTGGTTTCAGCAAATTCACAATTATCTGACtgaggaaaattatttgaaaatcatGGAAGACCCTACTCGAGTATTCAACAGTGATGAGACGTACTTTAACGTCTgtccaaaaatgaaaaacgtaCTTGCTAAAACACCATTCACTGACAACATTCCGGGCGAAGGATGGTACCGTGCTTTTCTCAAGAGACATCCAATTTTGTCAGAAAGATACCCCGAAGGAGTAACAAGTGCCAGTGCCAATGTGAGTGAAAAGGATATACGTAATTGGTTTCAGCAAATTCACAATTATCTGACtgaggaaaattatttgacaatCATGGAAGACCCTACTCGAGTATTCAATAGTGATGAGACGTACTTTAACGTCTgtccaaaaatgaaaaacgtaCTTGCTCCACGGGGATGTCGGAATGTGTATGAGACTGAAAAAGGCAATGCAAAAAGTGATGAGACGTACTTTAACGTCTgtccaaaaatgaaaaacgtaCTTGCTCCACGGGGATGTCGGAATGTttttatttacttttgcgCCAACGGTGACACAACGTCTCCAATGATAGTGTATCCGTATAAAAGATTGCCGACTGCAATTGGCTTATCTGTGCCTAAAAGTTGGGGTTTGGCTGCCACTCCGGGTGGATGGATGAACGATGATGCATTTTCTGGATATAGTTGGGGTTTGGCTGCCACTCCAGGTGGATGGATGAACGATGATGCATTTTCTGGATATATAAGCAAAGTTTTTTACCCATACCTTCTTGAACACCGAATCACTCTCCCggtgattttatttgaatctGTGCCTAAAAGTTGGGGTTTGGCTGCCACTCCGGGTGGATGGATGAACGATGATGCATTTTCTGGATATATAAGCAAAGTTTTTTACCCATACCTTCTTGAACACCGAATCACTCTCCCGGTGATTTTATTTGTCGATGGGCATAGTAGCCACGTTACTCTAATGGATATATAA
- Protein Sequence
- MSQCKAAKAYNIPKSTLKIMASNNRPSTSNIEWPRAIDAVNSGMSQCKAAKAYNIPKSTLNDEETIKRAIDAVNSGMSQCKAAKAYNIPKSTLQFRMSDKFVKTSPGPAPVLTYDEEQTLVKWILHRKGFPRRKEDLQSSIKKFLDETERETPFTDNIPGEGWYRAFLKRHPILSERYPEGVTNASANVSEKDIRNWFQQIHNYLTEENYLKIMEDPTRVFNSDETYFNVCPKMKNVLAKTPFTDNIPGEGWYRAFLKRHPILSERYPEGVTSASANVSEKDIRNWFQQIHNYLTEENYLTIMEDPTRVFNSDETYFNVCPKMKNVLAPRGCRNVYETEKGNAKSDETYFNVCPKMKNVLAPRGCRNVFIYFCANGDTTSPMIVYPYKRLPTAIGLSVPKSWGLAATPGGWMNDDAFSGYSWGLAATPGGWMNDDAFSGYISKVFYPYLLEHRITLPVILFESVPKSWGLAATPGGWMNDDAFSGYISKVFYPYLLEHRITLPVILFVDGHSSHVTLMDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -