Basic Information

Insect: Machimus rusticus
Gene Symbol: su(Hw)
Assembly: GCA_951509405.1
Location: OX608053.1:20248502-20251663[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0094 1.8 10.4 1.7 1 20 95 114 95 115 0.92

2 12 0.0002 0.038 15.7 1.7 2 23 172 194 171 194 0.90

3 12 1.2 2.3e+02 3.8 0.4 1 23 200 222 200 222 0.87

4 12 4.1e-06 0.00077 21.0 2.8 1 21 229 249 229 250 0.95

5 12 3.6e-05 0.0068 18.0 0.9 3 23 264 284 263 284 0.98

6 12 2e-07 3.7e-05 25.1 0.8 1 23 294 316 294 316 0.99

7 12 4.7e-06 0.00088 20.8 1.2 1 23 322 344 322 344 0.98

8 12 4.4e-06 0.00082 20.9 0.6 1 23 350 372 350 372 0.99

9 12 0.00031 0.059 15.1 5.1 1 23 378 400 378 401 0.94

10 12 0.0042 0.78 11.5 1.0 1 23 406 429 406 429 0.97

11 12 0.0041 0.76 11.6 4.8 1 19 437 455 437 460 0.91

12 12 2.4 4.5e+02 2.8 0.2 1 13 464 476 464 486 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0094	1.8	10.4	1.7	1	20	95	114	95	115	0.92
2	12	0.0002	0.038	15.7	1.7	2	23	172	194	171	194	0.90
3	12	1.2	2.3e+02	3.8	0.4	1	23	200	222	200	222	0.87
4	12	4.1e-06	0.00077	21.0	2.8	1	21	229	249	229	250	0.95
5	12	3.6e-05	0.0068	18.0	0.9	3	23	264	284	263	284	0.98
6	12	2e-07	3.7e-05	25.1	0.8	1	23	294	316	294	316	0.99
7	12	4.7e-06	0.00088	20.8	1.2	1	23	322	344	322	344	0.98
8	12	4.4e-06	0.00082	20.9	0.6	1	23	350	372	350	372	0.99
9	12	0.00031	0.059	15.1	5.1	1	23	378	400	378	401	0.94
10	12	0.0042	0.78	11.5	1.0	1	23	406	429	406	429	0.97
11	12	0.0041	0.76	11.6	4.8	1	19	437	455	437	460	0.91
12	12	2.4	4.5e+02	2.8	0.2	1	13	464	476	464	486	0.86

Sequence Information

Coding Sequence: ATGACATCTAAACGAGAATCAGAAGACGTTTtacaacttaaaattaatatggaaaatgatgaaattgaACTAATTGAGGACAATGAAGACGAAAAGACAGTGACGGTTGGTTCTGACACTTTTGTTATAAATGATTTCCGTTCCGAGAAATCGGATGtcgtaaattttgtaattgttgaTGAACACGAAACGGATTTGAAAGATGAGGAAGAAGAGGAAGATGAAGGAGAAGACGAAAAGAGCGAGCTAAAGGATGATGAAAATGTGCATGAAATCGTCGAACATGTTTGCGGAAAATGTTTCAAAGTCTACCGCAATTTGaatCGCTTGAAAAAGCATTTAACGTTTTGTCGGACTCAAACCAAGATCAACACTTCGAAAATGCAAAGTGAATATATCAAACAATTGGAACTCAATATGAAAGAAACCGAAAAAGAAGCAAAACAGATGGAAAAACGTGGCATATGTTTTTGCtgtgaagaaaattttgatactTATCACtcAGGACATATTCGCTGCTATGAGTGCccaaaatcattcaaaaatacaaaaagcttcGAAAGACATTTATTCTTTATACATTCTGGAAATGAGCAGTTTCCTTGTAAGACTTGCAATGCAAGATGTCCTACGGCTGGGATTTTAGAACTTCACGAATCTCAGCATCAAAGCCGTGGAAAGCCGTTCGCTTGCAAAAAATGTGGCAAGGACTTTACTCGTCCATATCACCTGTACAGGCACCAGAAATTTTCAACGTGCAACAACGCAAAACCAAAGGAAGGACTATTGTGTAAAGTCTGTTCGAGGGTATTTTACCGTGTCGACAATCTTAGAAGTCATTTACGTCAACATCTTGGAGACGATACGAAAAAAAGAGACTATCAGTGCCCTTATTGCGAAAAATCTTTCTACGGCACATCAACTTTAaatattcACATTCGGACTCATACAGGAGAACGTCCTTTTCCCTGCGACCTGTGCGAAAAGCATTTCCCTTCCAACGCTGCCCTAAGAAAGCATAGGCGGTCTCACACCGGAGAGAAGCCATACTCATGTTCCGTGTGCAGTAAATCTTTCGCCGCTAAAGAAGTACTCAATCGTCACATGAAAACTCACACAGGGGAGCGGCCTCACAGTTGCGATAAATGCAATAAAAGCTTCATCCAAGCCACTCAACTCAGATTGCATGAAAAATTCCATCACAGAACGGAAGTCTTCAAATGCGATATTTGCAAAATGGAATTTAACCTGCAAGGAAGATACGACAAGCATATGAAACAGGCCCATTCAGCTAAGAAAGAGGGAGGCCACCGCTGCGATATTTGTTCCAGGAGTTTCAAATCAGAAGGGGGTCTGAAAAAGCATTGCACTTCGAAGCACTCTAAACAATTTGAATGCGGAACCTGTAATGCAATGTTCGTTTCTGAAAAGGATCGCGATTTCCATGCACTGCGACATGATGATGACTCCAAAAGTGTCATAATTTTACCTGAAACAGAAAATGCTCAAAGCCCAGAACCTGAAAATGAATTCACAATTATTTTGGCATCTACTACTGATACACAAGATGATCACGTTAAACAGGATCCTGAAATAGATTTGGAAGAGAATGGTCACACATTAATAATGGAAGTCGAGGACGCCGAAGACACCACAATTGTAATGGATGAAAtcactttaaagaaaaacattacAAAACTATTAGATATACTTTTGGAGAAagatatattacaaaaatttggatGGCCCTCTGCTGATGTGGAATATGTTTTACAAGAAGTCATCAAAAACTGTGGACAACATCCGCCGAATTACGATGAGTACATGGATTATTCTACAAAAATGCGAGAATACGTGAAGCTACTGTTCACTGTTGTAATAGATAATGATTCCATCAAAGAGCTTTTAAATAATCATCCGATTGATGAAGTCATTCATCAAGTTCTTAAAATGGCAAATGTTAATGGATTCtga
Protein Sequence: MTSKRESEDVLQLKINMENDEIELIEDNEDEKTVTVGSDTFVINDFRSEKSDVVNFVIVDEHETDLKDEEEEEDEGEDEKSELKDDENVHEIVEHVCGKCFKVYRNLNRLKKHLTFCRTQTKINTSKMQSEYIKQLELNMKETEKEAKQMEKRGICFCCEENFDTYHSGHIRCYECPKSFKNTKSFERHLFFIHSGNEQFPCKTCNARCPTAGILELHESQHQSRGKPFACKKCGKDFTRPYHLYRHQKFSTCNNAKPKEGLLCKVCSRVFYRVDNLRSHLRQHLGDDTKKRDYQCPYCEKSFYGTSTLNIHIRTHTGERPFPCDLCEKHFPSNAALRKHRRSHTGEKPYSCSVCSKSFAAKEVLNRHMKTHTGERPHSCDKCNKSFIQATQLRLHEKFHHRTEVFKCDICKMEFNLQGRYDKHMKQAHSAKKEGGHRCDICSRSFKSEGGLKKHCTSKHSKQFECGTCNAMFVSEKDRDFHALRHDDDSKSVIILPETENAQSPEPENEFTIILASTTDTQDDHVKQDPEIDLEENGHTLIMEVEDAEDTTIVMDEITLKKNITKLLDILLEKDILQKFGWPSADVEYVLQEVIKNCGQHPPNYDEYMDYSTKMREYVKLLFTVVIDNDSIKELLNNHPIDEVIHQVLKMANVNGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00628602;
90% Identity: iTF_01184019;
80% Identity: -