Mrus006680.1
Basic Information
- Insect
- Machimus rusticus
- Gene Symbol
- -
- Assembly
- GCA_951509405.1
- Location
- OX608049.1:49374977-49379146[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-10 1.6e-07 32.1 0.0 1 38 396 434 396 439 0.90 2 4 2e-13 1.9e-10 41.5 0.1 2 39 451 488 450 491 0.94 3 4 1.9e-17 1.9e-14 54.3 0.0 1 45 505 550 505 550 0.98 4 4 9.1e-18 8.9e-15 55.4 0.0 1 43 557 600 557 601 0.96
Sequence Information
- Coding Sequence
- ATGACCTATCGGTCTGGGTTACTGAGAACTGCTGAGCAATTAAAGATCAAAGGTCTTTGCGAGACCGCAGAAACAGTTGATGAGGTATCATCGGAAACAGCGACAACAACAACAATCACAGTCCCAGAAACAATACCGATTACAAATATCGGAAATACGAATACCCTCACCCACGTAAATAATACCACCCAGAGGAAGACACGTGTCAGAAAACGTTCAAAATCACCGGACACAAATCAATCGATCATCAACGGAACTCAGACCTTCAACGCATCAGCGATTGTAAACCTTAATCCATCGTCAACTTCGACAATCACATCTGGAACAGCAGTGTCAGGTGGAAACGCCATAACAACAACTGCAATCACACATTTCAAAACCGAACATCAATCCCAGGTGACCAGCTCGAACACAGATTCTGTTTCTGACGATATTGGATCGAAGCcaacaaaaatttgcaaaaccGAAGATTCAGCAAATAATGGAAGCGGGGTTGTCACCCCAGGCACTGCTATCGTAACGCAAATTGTTGTTGCACGAGACGGTAAAGACAAAAACATGACCAGCTTAGGTATGGGAATGaacgGCGGTCTGTTGGGCGTTCCAATGGGCTTCCTAGACTTTGCACCGGAACCGCCGGCACCTTCTGCTACACCAGTTACAGAGCACGTTGACATGTCGTGTCCACCAAGCGCTGATACAAGAGACTTATCAAATCCCACCGAAGCCCTCGATATAGACAATCAGATTGCCCAACATATAATTCATCGGCTCGATCAATCGCCAATGCATCAAATGCAACATCAGTCTACGACCGACGATACAAACTCGAATCTCATCCAGAACATCAAAAGCGAAGTAGTCGATGTTAAACATCATGTTCAACAACAGCTTCAAACCCAACAAACACAGTCCCACCAACAACATACCCACCACCAGGATATATCGGGATCCACCGTAATGGAAATTGATCCGAGCAATATAAAACACGAACCGGGAATGATAATAACCCCGGAAATCGTTACTATGATGACGACAGGACATATGGATATTTACAATTCGGATACAAGCGAGGACTCTCTCATGATTGCGAACGGATCTCCCAACGATAACAATGAACCGCACTATACGAATTTGGATCAGCAACAGGACATGAAATGCCAGCCGAATGGAGCAAAGACTTGGACTCAAGAGGACATGAACTCTGCATTAGAAGCtctcaaaaatcaaaatatgagTTTAACAAAGGCGTCTGTAACGTATGGTATTCCGCCGACAACATTGTGGCAAAGGGCTCATCGAATGGGCATTGATACACCGAAAAAAGAAGGCACTACTAAATCATGGAATGAAGAAGCTCTGAACAATGCCCTTGAGGCACTTCGAACCGGACAAATATCAGCGAACAAAGCCTCAAAGGCATACGGAATTCCGTCCTCAACTTTGTACAAAATAGCACGTAGAGAAGGTATACGATTGGCGGCACCGTTTAATGCAGCTCCAACAACATGGACACCCGAAGATTTGGAACGTGCTTTGGAAGCTATTCGTGCTGGTCACACCTCCGTCCAAAAAGCTAGCACGGAATTCGGTATTCCAACTGgaaCATTATACGGTCGCTGTAAGAGAGAGGGAATTGAATTATCTCGATCAAATCCTACACCATGGTCTGAAGATGCTATGAACGAGGCTTTAGTCGCAGTGAGGGTGGGCCACATGTCCATAAACCAAGCCGCAATCCATTACAACTTACCGTACAGCTCACTTTATGGTCGATTTAAGCGGGGAAAATATGATACAAATGCAACAAATGCCAACACAAACAACACCAGTGCAAACACAAGTGGCAACATTGAAATGATTGAGCACAGTCCAGAGAATTCGTTGCACATATTTCAGCAATTTCAATACAGCCCTGGGCCCTCAAACACCCAGACTCATCATCATCAACAACAACcccagcagcagcaacagcagcaacagcaacagcaacaacaacagcaacaacaacaacagcagcagcaacaacagcaacagGCACAACATCAGCAACATCAGCCACAACATCAACAACACCAGCCACATCAGCAACATCATATtcaacaacagcaacagcagcatcAACAACACCCACAGCAGCATCATCCACACCCACACCTACAGCAGCAGCAGGATGTTGTAACCTCTTCCAGCCAAGTCCACACGCAAACCGGccaaattcaacaaatttacCACCACCACAGCACTTCGGAGAGGAGTTGA
- Protein Sequence
- MTYRSGLLRTAEQLKIKGLCETAETVDEVSSETATTTTITVPETIPITNIGNTNTLTHVNNTTQRKTRVRKRSKSPDTNQSIINGTQTFNASAIVNLNPSSTSTITSGTAVSGGNAITTTAITHFKTEHQSQVTSSNTDSVSDDIGSKPTKICKTEDSANNGSGVVTPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCPPSADTRDLSNPTEALDIDNQIAQHIIHRLDQSPMHQMQHQSTTDDTNSNLIQNIKSEVVDVKHHVQQQLQTQQTQSHQQHTHHQDISGSTVMEIDPSNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNNEPHYTNLDQQQDMKCQPNGAKTWTQEDMNSALEALKNQNMSLTKASVTYGIPPTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTNATNANTNNTSANTSGNIEMIEHSPENSLHIFQQFQYSPGPSNTQTHHHQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQAQHQQHQPQHQQHQPHQQHHIQQQQQQHQQHPQQHHPHPHLQQQQDVVTSSSQVHTQTGQIQQIYHHHSTSERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431749;
- 90% Identity
- iTF_00628156;
- 80% Identity
- -