Basic Information

Insect: Machimus atricapillus
Gene Symbol: prdm10
Assembly: GCA_933228755.1
Location: CAKOFS010000039.1:81793-84205[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00011 0.021 16.3 0.1 2 23 147 168 146 168 0.96

2 11 0.0062 1.1 10.8 5.0 2 23 203 224 202 224 0.96

3 11 0.00014 0.026 16.0 4.0 1 23 246 268 246 268 0.96

4 11 0.0047 0.87 11.2 0.7 1 23 276 298 276 298 0.99

5 11 0.0038 0.69 11.5 1.7 1 23 303 325 303 325 0.97

6 11 0.0035 0.65 11.5 4.8 1 23 331 354 331 354 0.97

7 11 0.00072 0.13 13.7 0.5 1 19 359 377 359 379 0.95

8 11 1.3e-06 0.00025 22.3 1.0 1 23 387 410 387 410 0.94

9 11 0.0015 0.28 12.7 1.4 1 23 460 483 460 483 0.97

10 11 0.0019 0.34 12.4 2.3 1 23 505 528 505 528 0.96

11 11 0.016 2.9 9.5 1.7 2 23 560 582 559 582 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00011	0.021	16.3	0.1	2	23	147	168	146	168	0.96
2	11	0.0062	1.1	10.8	5.0	2	23	203	224	202	224	0.96
3	11	0.00014	0.026	16.0	4.0	1	23	246	268	246	268	0.96
4	11	0.0047	0.87	11.2	0.7	1	23	276	298	276	298	0.99
5	11	0.0038	0.69	11.5	1.7	1	23	303	325	303	325	0.97
6	11	0.0035	0.65	11.5	4.8	1	23	331	354	331	354	0.97
7	11	0.00072	0.13	13.7	0.5	1	19	359	377	359	379	0.95
8	11	1.3e-06	0.00025	22.3	1.0	1	23	387	410	387	410	0.94
9	11	0.0015	0.28	12.7	1.4	1	23	460	483	460	483	0.97
10	11	0.0019	0.34	12.4	2.3	1	23	505	528	505	528	0.96
11	11	0.016	2.9	9.5	1.7	2	23	560	582	559	582	0.97

Sequence Information

Coding Sequence: ATGTGCCAAACCATTTTTAACCAATCCAATTCTATGGCTTGTGTATTCGCCAAAAAGGAATTGCCTCTACGAACAAAATTTGGTCCGTTCGAAGGTGAGGTAAAATTTACTTCAGAAGAAATGCTGGACGTATTGAGGATTCAAACTATGCGATCTTATCCTGTTTTGCTCCTAGGAAAAGGAAGAATTTTAGATGTAACCAATGAAAACAATTCCAATTGGATGCGGTTTGTCCGATCGGCTAGTACATTTAGCGAACAAAACTTAGTGCTTCTCGAAGAATCAGGAAAATTGTATTTCAAATGTAGCCGACCTATCAAACCAAAAGAAGAGCTCAAAGTTGGATACAGCACACAATACGCTGATCAATATGGGCTTAGAATTTTAGTACCGACCGAAAAAGAATCAGAAGATATATTTAATCAAGAAAATCCGTGGCCTTGTTATGAATGTGATTTGAGGTTTCCAACATCTAGTGATATGCAGAATCATTTGAGTGTTCATGAAATTGAAGAAGACGCTGAATTTGAGCAAAAAGAGAAGCTTAAAGCAAGAAAAAAGAAGAAACCCTTTAAACGATTAGTCGAAGTTCGGAAAAATTCTAGTCGGTGCTGCTACTGCATGAAAGTCTTCATGACTAGCACTAGTTTAAAAAAGCATATGACTCAGCATTTGATAGAGAAAAGGTCTAACAAACATTCGTCTAGAAATTTTAACACCGATAATAATTATAGTTTTAAATGTAATATTTGCTATAAGAAATTTAAATCTGAAAAAAAATTAAAGAATCACAAAATACTTCACATTAAGAATGAACTTAAACTGTATACCTGCCCTCACTGCAACTTGAACCATCCAACATCAGCAGCACTGGCGGTACATGTAAAAACGCATTCAAACCGCAATTTCAAATGTGTTTTTTGCCCCGAAACATTCAAACATGTGAACACCTTCAAGTTACACGTTGCAGTGCATGCTTTAAACGGTATTTACACGTGTCACCTATGTAAAAAGAAATACCGGGAGTATAACTTAGTGAGAAAGCACATTAAAGTCTTTCATCCGGCTGTTAAATTTTCATGCAACGAATGTGGCCGTCAATTTATTAACATGAATTTCTTGCGTCGTCACAAAGTTTGCCATTCAGAAAAGCGAGAGTTCTTATGCTCCGAATGCGGTAAGCAATTTAAACGCAAAGATAAACTCAGAGAACATATATTAAGAATTCATACTGGAAACAAGAAAAAACCTAAAAGAAAAATTAGTTGTGAGGATAGAGAAAGTCACGATATATCAAAGTACCTCGATTTCAGTCCAGTGAAAGAAAATCGAGTTTCACAACCTAAGGATCCTCCGAACGATTTTGAAAATTTCACTTACAAATGCCATGATTGCATGGTTGGATTTAAGAGACGGGGAATGCTTGTGAATCATTTAGCAAAGCGTCATCCGAATGTGCACATAGACACAATTCCAGAGCTAAATCTTCCGATTATAAAACCGCAATCTCTTTTCTTTTGCCAATACTGCTCCAAGGTTTACAAGAGTAATGGTAAGAGAAAAGTTCACATTTTAAAGAATCATCCTGGGCAAGAGCCACCGCCTTCAGTAAGGAATCACCCTGAACCATCTTTAATTAATGTTAAAAAAGTTGGAAATGTAAAAACAGAACCACAACGGTGTCAGTGGTGCTATAAACAGTATGCAACTAGGAATCGTCTTCTATCCCATTACCGAAAAGAACATCCTGGCAAACAAGTCGTCGACAGTAGCAAACAATATTATGTTCCTGAAGAACCCATGGACATCTATCGCCCTCCAAATTCGCCAGAAAATAAATTATTAAAACTCTCTTCAGCTGCGCTTGAACTGTCCTCGCTAGAAGATCGCAAATTTTTCGATTTTTTGAATGAGAGATCTGATGATCACAGCTCAATAACTTCGAACTGCCCTCTTGATGACACTGTGAATACCTTCCCAAAGGTAGATGTTAATTTTAAAGTAGTTGATGGTGAGTTTTCAGAGAGTTCATCGAATAATGAATTAAACAGACTTCCGCAGCTATTTGAAGAGTCGATCACATGTATTTAA
Protein Sequence: MCQTIFNQSNSMACVFAKKELPLRTKFGPFEGEVKFTSEEMLDVLRIQTMRSYPVLLLGKGRILDVTNENNSNWMRFVRSASTFSEQNLVLLEESGKLYFKCSRPIKPKEELKVGYSTQYADQYGLRILVPTEKESEDIFNQENPWPCYECDLRFPTSSDMQNHLSVHEIEEDAEFEQKEKLKARKKKKPFKRLVEVRKNSSRCCYCMKVFMTSTSLKKHMTQHLIEKRSNKHSSRNFNTDNNYSFKCNICYKKFKSEKKLKNHKILHIKNELKLYTCPHCNLNHPTSAALAVHVKTHSNRNFKCVFCPETFKHVNTFKLHVAVHALNGIYTCHLCKKKYREYNLVRKHIKVFHPAVKFSCNECGRQFINMNFLRRHKVCHSEKREFLCSECGKQFKRKDKLREHILRIHTGNKKKPKRKISCEDRESHDISKYLDFSPVKENRVSQPKDPPNDFENFTYKCHDCMVGFKRRGMLVNHLAKRHPNVHIDTIPELNLPIIKPQSLFFCQYCSKVYKSNGKRKVHILKNHPGQEPPPSVRNHPEPSLINVKKVGNVKTEPQRCQWCYKQYATRNRLLSHYRKEHPGKQVVDSSKQYYVPEEPMDIYRPPNSPENKLLKLSSAALELSSLEDRKFFDFLNERSDDHSSITSNCPLDDTVNTFPKVDVNFKVVDGEFSESSSNNELNRLPQLFEESITCI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00718032; iTF_01049909; iTF_00628633;
90% Identity: iTF_01049909;
80% Identity: -