Matr001647.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000012.1:107734-109031[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.4e-08 0.00011 22.9 0.2 6 38 44 76 41 80 0.93
Sequence Information
- Coding Sequence
- ATGACACTTGTCGTCAATGTCGGCCCACTTGTGTTGTCAGGGTTGGCCCACCAAAATAAGACGCCAGTACCCAGAACATCTCGGAACAAGCGAACCACCGATCGGGGTAACGTAGATTTGGCAAATGTCGTTCGCGCCGTAAGAGCCGTCTTGTCGGAGAAGAATTCAGTTAGAGCCATGGCACAGACGTACAATCTGCCCCGAACGACTTTGCGGCGATATTTGAAGAACGTGTCGTCGGTTTACGAAGACCTTTCCATCGTCGGTGGTCAAGAACTAATGAAATCCATACAACGGCTTGGAACATACGCTGCGTGTTGTGTGAAGCAAGTTTTTTCAGCAGAACAAGAGGAAGCGTTGGTCGGGTATGTGAAAAAATGCAGTGCCCATTACTATGGCCTGAGCATCCTTGAATTGAGAGAGTTGGCATACCAATTTGCGAAGAAAATCGACGCTAATTATCCTTCAAACTGGGATTCCGACAAAATGAGCGGGCGCGATTGGTATTACGGATTTATGCGACGTCACCAATCTCTCACGCTGCGCACGCCCGAACAAACTAGCTTAAATAGGGCAAAATCGTTTTGCAAAGAGAATGTGGAGCTGTTTTTCCGCAATCTGGATTTGGTTTTGACGCAGCATCCATTTCAATCAGCGGATATTTGGAATATGGATGAAACAGGCTTTTCAACGGTGCCAACGAAGACTGGGAAGGTGCTTACAGTGCGAGGCATGAAAAGAGTAGGCCAAATAACTTCTCAAGAACGAGGAAATATGGTCACTATGGCTCTGACGGTCAATGCAGAGGGAAATTCCATCTCACCATTTTTCTTGTTCCCTCGCCAGAAAATGCAGTCTACATTCATGGAAAATGCAAGTCCTGGAGCAATGGGCTATGCTAATGGAACTGGGTGGATGCAGCAGGCAGAATTCGAGAGATATATCCAGTTCTTCATTGATAAAACGAAGGCCTCGCAGCAATCACGTAAATTGCTGTTGCTAGACAATCACGCCTCTCATCTTTCCATTGCTGCGTTAGACATGGCTGTTGCAAATGGTGTCACTTTTCTCTCATTTCCGCCACATTGCAGCCATCGCTTGCAACCGTTAGATATATCGGTTTACGGCCCTGTAAAAGCTTACTACAAGTCACAATGTAATGCCTGGCAGAAGAACCACGCTGGTCGACAACTAGAAATTCGACACATTCCACAACTAGCTTACGAATGA
- Protein Sequence
- MTLVVNVGPLVLSGLAHQNKTPVPRTSRNKRTTDRGNVDLANVVRAVRAVLSEKNSVRAMAQTYNLPRTTLRRYLKNVSSVYEDLSIVGGQELMKSIQRLGTYAACCVKQVFSAEQEEALVGYVKKCSAHYYGLSILELRELAYQFAKKIDANYPSNWDSDKMSGRDWYYGFMRRHQSLTLRTPEQTSLNRAKSFCKENVELFFRNLDLVLTQHPFQSADIWNMDETGFSTVPTKTGKVLTVRGMKRVGQITSQERGNMVTMALTVNAEGNSISPFFLFPRQKMQSTFMENASPGAMGYANGTGWMQQAEFERYIQFFIDKTKASQQSRKLLLLDNHASHLSIAALDMAVANGVTFLSFPPHCSHRLQPLDISVYGPVKAYYKSQCNAWQKNHAGRQLEIRHIPQLAYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -