Matr020385.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000114.1:1419620-1420153[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-08 4.5e-05 24.1 0.0 4 38 17 50 14 54 0.89
Sequence Information
- Coding Sequence
- ATGCGAACTTACAAACGGAAAACGGAACGTGGTAATATTAGTAAAGATTTAATAAAACGAGCTGTAGATGAAGTCATCAATGGTACAAGCATCCGTAAAGCGGCTAAAGATAACAAAATAGACAGAACTACACTTTCGAGATATGTTAATAAGTTAAAAGCTGACCCTGACTCTGATGTGTTTAAGGAGTACACAAACGCACGCCAAGTTTTTTCAAATGAACAAGAAAAAATATTAAAAGATTATCTTATAAAAGTTGCATCTATATTTTATGGTTTAACTCCATCAGATGTACGTGGGCTTGCTTATGAATGTGCCGTTAAATATAATCGAAAAATACCTGAGAGTTGGCATACAAATAAATTAGTTGGAAAGGATTGGCTTACCACTTTTCACTTTTGCGCTGAGTCCTATTCAGACAGTCTCCCAGGAGAAGAGTGGGTACAGTGCACTAGTTGCCGAGATTGGGCTCACATTAAGTGCACTTCTGGTGTCAcagtttatgtttgcatgaactgtgacagtagtaactaa
- Protein Sequence
- MRTYKRKTERGNISKDLIKRAVDEVINGTSIRKAAKDNKIDRTTLSRYVNKLKADPDSDVFKEYTNARQVFSNEQEKILKDYLIKVASIFYGLTPSDVRGLAYECAVKYNRKIPESWHTNKLVGKDWLTTFHFCAESYSDSLPGEEWVQCTSCRDWAHIKCTSGVTVYVCMNCDSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00936478;
- 90% Identity
- iTF_00936478;
- 80% Identity
- -