Matr019427.2
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000107.1:663665-665372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-10 3.3e-07 30.9 0.0 3 38 16 52 14 55 0.90
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTACCAAAGAAAGACTGAGACCAAATACAAATTAGAAGACTTAGAAAAGGCCATTCAGGATGTCAAAAATAAAACACTTTCACTTGGAAAAGCAGCTGCTACTTATTCTGTTCCGAAAAGTACTATACACGACTATCTCAAGAAAGAAGTTATAAACGAACCAAAAACTGGTAGAAAGGCTATATTTTCTGAAGAACAAGAAAAAGAATTAGAGGACTATATCATGAAATGCAGTAAATTATTTTATGGTTTAACTATAGAAATGGTCCggaaaatagcttttaagtttgccgaagtaaataatttaaaacaccaatttgaccaaacttctcaaatggcaggaaaagactggatttatggatttaagaaaaggcaccctaatatttcgctacgtaaacctgagtccacttctatcaataggattacggcttttaatgcaagagaagtgaaaatgttcttcgataacttggaaaatttgcaaaccaaacaccactttgatactaaccgtatatacaatgttgacgagacaggcatatccaatgtccaaagaaattcaaggattttagcaccgaaaggtcagaaacaggtcggcatggcaacaagtggtgaaagaggtactacaacgacagttgtttgtgcctttagtgcttcaggaaagtatattcctccgttttttatttttaagaggaagcgaatgagtgatcagttgttacgtggaggcaatgttgatatgatagcagccgtaagcgattcagtcctacttattctagacaatcatgaaagccacgtgagtcttgcctgctatctgctttgtcgccagaacggaataatattgttatcccttcctccccacacggctcatcgtatgcaaccattggacttaacatattttggacctctcaagacttcatataatagagaatgcgacttgtacatggctgaaaacgtaggccgaagaattacacagtatgaacttttcgaacttttcacgaaagctttcaatcgcatcagcaacttagaaaaagcagcaaacggtttccgagcagctggtatttggccaatagatacaaataaatttgatgaacatttAGTAGATGCGACATCACCACCTGAAAATTCAAATGGCAATAATTTGCAAGGTGACATAGCAGTAACACATGATAGGCAGATTGCATCAACATCAAATGTCGAAGGAGCAGTAACACCGGATGCACAGATACCATCGACATCAAACGTGCAAAGAGAAATGACACCTAATACACAGATAGTATCGACATTAAATTATGTACAGCAGAGACCAGTTACCCCAGAAGCTATGTTGGACAAATCAATCCCACTTGAAGACATCGTTGATATTCCTAAATTACCATTAAATCAAAGTAAACAAACTGTTAGAAAAAAACATTCAGTTATAATAACCAGTACCCCTATGAAAGATATTTTAGAGAAAAAAGAAGAAAAAAAGAAAAATAGTCAAAAGACAGTAAGTTCCACAACAGTTAAAAAAGGAGTGAAGAATTTTAAATATTTTTCCGATGATAGCATTCAAACAAAGGCTCAAGAAAGGGACATACCGCGCAAGAAAAAAAAGGCCAATGAAGGAGATGAGCAAAAAAATTAA
- Protein Sequence
- MPRNYQRKTETKYKLEDLEKAIQDVKNKTLSLGKAAATYSVPKSTIHDYLKKEVINEPKTGRKAIFSEEQEKELEDYIMKCSKLFYGLTIEMVRKIAFKFAEVNNLKHQFDQTSQMAGKDWIYGFKKRHPNISLRKPESTSINRITAFNAREVKMFFDNLENLQTKHHFDTNRIYNVDETGISNVQRNSRILAPKGQKQVGMATSGERGTTTTVVCAFSASGKYIPPFFIFKRKRMSDQLLRGGNVDMIAAVSDSVLLILDNHESHVSLACYLLCRQNGIILLSLPPHTAHRMQPLDLTYFGPLKTSYNRECDLYMAENVGRRITQYELFELFTKAFNRISNLEKAANGFRAAGIWPIDTNKFDEHLVDATSPPENSNGNNLQGDIAVTHDRQIASTSNVEGAVTPDAQIPSTSNVQREMTPNTQIVSTLNYVQQRPVTPEAMLDKSIPLEDIVDIPKLPLNQSKQTVRKKHSVIITSTPMKDILEKKEEKKKNSQKTVSSTTVKKGVKNFKYFSDDSIQTKAQERDIPRKKKKANEGDEQKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01359657; iTF_01359654; iTF_01359656; iTF_01359658; iTF_00936475;
- 90% Identity
- -
- 80% Identity
- -