Basic Information

Insect: Machimus atricapillus
Gene Symbol: -
Assembly: GCA_933228755.1
Location: CAKOFS010000003.1:338575-346849[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 9.9e-11 1.6e-07 31.9 0.0 1 38 498 536 498 541 0.90

2 4 1.2e-13 1.9e-10 41.2 0.1 2 39 553 590 552 593 0.94

3 4 1.1e-17 1.9e-14 54.1 0.0 1 45 607 652 607 652 0.98

4 4 5.4e-18 8.9e-15 55.1 0.0 1 43 659 702 659 703 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	9.9e-11	1.6e-07	31.9	0.0	1	38	498	536	498	541	0.90
2	4	1.2e-13	1.9e-10	41.2	0.1	2	39	553	590	552	593	0.94
3	4	1.1e-17	1.9e-14	54.1	0.0	1	45	607	652	607	652	0.98
4	4	5.4e-18	8.9e-15	55.1	0.0	1	43	659	702	659	703	0.96

Sequence Information

Coding Sequence: ATGCTAACTTTTATGTCTAACGTACTTAAACTTAATCAGGGTCATTACACCGGCGTGAACCGCAGCTGTGAATTGTCGCTGTCGTCGTCATCACATCATGCCTACTACCTGACTGCCTGCTCTGTGCTCTGTTGGCTCGGCTCTCAGTCTTGGCTGTTTCAACTAAAAGACGAATATCCTCTAACCCCAAACATTCCTCTTTTTTTAATCTCACCAGACACCGCCAGTGTGCCAATGTGCAGAAAAAAGGGACAAAGCGGGTATGGGTGGGAATGGGGATGGGGATGGGAATGGAATGGGAGAGGGTTCCAGAGGGTTGTGGGTTTGCTAAGAACTGCTGAGCAGTTAAAGATCAAAGGTCTTTGCGAGACCGCAGAAACAGTTGATGAGGTATCATCGGAAACAGCGACGACAACAACAATCACAGTCCCAGAAACAATACCGATTACAAATATCGGAAACACAAATACACTAACCCACGTAAATAATACCCCGCAGAGGAAGACACGTGTCAGAAAACGTTCAAAATCACCGGACACAAATCAATCGATCATCAACGGAACTCAGACCTTCAACGCATCAGCAATTGTAAACCTTAATCCATCGTCAACATCGACAATCACATCTGGAACAGCTGTGTCAGGTGGAAACGCGATTACAACAACTGCAATCACACATTTCAAAACCGAACATCAATCCCAGGTGACCAGCTCGAATACTGATTCTGTTTCTGACGATATTGGATCGAAGCCAACAAAAATTTGCAAAACCGAAGATTCAGCAAATAATGGAAGCGGGGTTGTCACCCCAGGCACTGCTATCGTAACGCAAATTGTTGTTGCACGAGACGGTAAAGACAAAAACATGACCAGTTTAGGTATGGGAATGAACGGTGGTCTGTTGGGCGTTCCAATGGGCTTCCTAGACTTTGCACCGGAACCTCCGGCACCTTCTGCTACACCTGTTACAGAGCACGTTGATATGTCGTGTCCACCAAGCGCTGACACGAGAGACTTATCAAATCCCACCGAAGCCCTCGATATAGACAATCAGATTGCCCAACATATAATTCATCGGCTCGATCAATCGCCAATGCATCAAATGCAACATCAGTCTACGACCGACGATACAAACTCGAATCTCATCCAGAGCATCAAAAGCGAAGTAGTCGATTGTAAACATCATGTTCAACAACAGCTTCAAACCCAACAAACACAGTCCCACCAACAACATACCCACCACCAGGATATATCGGGATCCACCGTTATGGAAATTGATCCGAGCAATATAAAACACGAACCGGGCATGATAATAACACCGGAAATCGTCACTATGATGACGACAGGACATATGGATATTTACAATTCGGATACAAGCGAAGACTCTCTAATGATCGCGAACGGATCTCCCAACGATAACAATGAACCACACTATACGAATTTGGATCAGCAACAGGACATGAAATGCCAACCGAATGGAGCAAAGACTTGGACTCAAGAGGACATGAACTCTGCATTAGAAGCTCTGAAAAATCAAAATATGAGTTTAACAAAGGCATCTGTTACGTATGGTATTCCCCCGACAACATTATGGCAGAGGGCTCATCGAATGGGCATTGATACACCGAAAAAAGAAGGCACTACAAAATCATGGAATGAAGAAGCTCTGAACAATGCCCTTGAGGCTCTTCGGACCGGACAAATATCAGCGAACAAAGCCTCAAAGGCATACGGAATTCCGTCCTCAACTTTGTACAAAATAGCACGTAGAGAAGGTATACGATTGGCGGCACCGTTTAATGCAGCTCCAACAACATGGACACCCGAAGATTTGGAACGTGCTTTGGAAGCTATTCGTGCTGGTCACACCTCCGTCCAAAAAGCTAGCACGGAATTCGGTATTCCAACTGGAACACTATACGGTCGCTGTAAGAGAGAGGGAATTGAATTATCGCGATCAAATCCTACACCATGGTCTGAAGATGCTATGAACGAGGCTTTAGTCGCAGTGAGGGTGGGCCACATGTCCATTAACCAAGCCGCAATCCATTACAACTTACCGTACAGCTCACTTTATGGCCGATTTAAGCGGGGAAAATATGATACAAATGCAACAAATGCCAACACAAACAACACAAACAACACCAGTGCAAATACAAGCGGCAACATTGAAATGATCGAGCATAGTCCAGAGAATTCGTTGCACATATttcagcaatttcaatacagccccgggccctcaaacacccagactcatcatcatcagcaacaacaaccccagcaacagcaacaacagcaacaacaacaacagcaacaacaacaacagcagcaacaacagcagcagcagcaacaacaacaacagcagcagcagcaacaacaacaggcacaacatcaacaacatcaaccacaacatcaacaacaccagccacatcagcaacatcatattcaacaacaacagcatcaacaacacccacagcaacatcatccacatcaacacctacagcagcagcaggatgttgtaacctcttccagccaagtccacacgcaaaccggccaaattcaacaaatttaccaccaccacagcaCTTCGGAGAGGAGTTGA
Protein Sequence: MLTFMSNVLKLNQGHYTGVNRSCELSLSSSSHHAYYLTACSVLCWLGSQSWLFQLKDEYPLTPNIPLFLISPDTASVPMCRKKGQSGYGWEWGWGWEWNGRGFQRVVGLLRTAEQLKIKGLCETAETVDEVSSETATTTTITVPETIPITNIGNTNTLTHVNNTPQRKTRVRKRSKSPDTNQSIINGTQTFNASAIVNLNPSSTSTITSGTAVSGGNAITTTAITHFKTEHQSQVTSSNTDSVSDDIGSKPTKICKTEDSANNGSGVVTPGTAIVTQIVVARDGKDKNMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMSCPPSADTRDLSNPTEALDIDNQIAQHIIHRLDQSPMHQMQHQSTTDDTNSNLIQSIKSEVVDCKHHVQQQLQTQQTQSHQQHTHHQDISGSTVMEIDPSNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNNEPHYTNLDQQQDMKCQPNGAKTWTQEDMNSALEALKNQNMSLTKASVTYGIPPTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTNATNANTNNTNNTSANTSGNIEMIEHSPENSLHIFQQFQYSPGPSNTQTHHHQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAQHQQHQPQHQQHQPHQQHHIQQQQHQQHPQQHHPHQHLQQQQDVVTSSSQVHTQTGQIQQIYHHHSTSERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01431749;
90% Identity: iTF_00628156;
80% Identity: -