Basic Information

Insect: Macaria liturata
Gene Symbol: -
Assembly: GCA_964023185.1
Location: OZ026817.1:11060867-11068220[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.1 3.1e+02 2.7 0.3 3 23 110 130 109 130 0.95

2 16 0.48 37 5.6 0.6 2 23 134 156 133 156 0.93

3 16 0.52 40 5.5 1.7 3 23 375 396 373 396 0.94

4 16 6 4.6e+02 2.2 0.1 3 19 406 422 404 422 0.96

5 16 0.073 5.7 8.2 0.3 2 23 435 456 434 456 0.93

6 16 0.001 0.077 14.1 1.7 1 23 504 527 504 527 0.95

7 16 0.7 54 5.1 0.4 2 13 601 612 600 623 0.81

8 16 8e-05 0.0062 17.5 4.1 1 23 657 679 657 679 0.97

9 16 1.4e-05 0.0011 19.8 1.5 1 23 686 708 686 708 0.98

10 16 0.00045 0.035 15.1 2.5 1 23 713 735 713 735 0.96

11 16 0.00089 0.069 14.2 1.9 1 23 741 763 741 763 0.98

12 16 1.7e-06 0.00013 22.7 1.1 1 23 768 790 768 790 0.97

13 16 2.6e-06 0.0002 22.2 1.0 2 23 797 818 797 818 0.98

14 16 0.015 1.1 10.4 0.3 2 23 828 850 827 850 0.96

15 16 8.3e-05 0.0064 17.5 0.4 1 23 855 877 855 877 0.99

16 16 0.039 3 9.0 1.8 1 23 883 906 883 906 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.1	3.1e+02	2.7	0.3	3	23	110	130	109	130	0.95
2	16	0.48	37	5.6	0.6	2	23	134	156	133	156	0.93
3	16	0.52	40	5.5	1.7	3	23	375	396	373	396	0.94
4	16	6	4.6e+02	2.2	0.1	3	19	406	422	404	422	0.96
5	16	0.073	5.7	8.2	0.3	2	23	435	456	434	456	0.93
6	16	0.001	0.077	14.1	1.7	1	23	504	527	504	527	0.95
7	16	0.7	54	5.1	0.4	2	13	601	612	600	623	0.81
8	16	8e-05	0.0062	17.5	4.1	1	23	657	679	657	679	0.97
9	16	1.4e-05	0.0011	19.8	1.5	1	23	686	708	686	708	0.98
10	16	0.00045	0.035	15.1	2.5	1	23	713	735	713	735	0.96
11	16	0.00089	0.069	14.2	1.9	1	23	741	763	741	763	0.98
12	16	1.7e-06	0.00013	22.7	1.1	1	23	768	790	768	790	0.97
13	16	2.6e-06	0.0002	22.2	1.0	2	23	797	818	797	818	0.98
14	16	0.015	1.1	10.4	0.3	2	23	828	850	827	850	0.96
15	16	8.3e-05	0.0064	17.5	0.4	1	23	855	877	855	877	0.99
16	16	0.039	3	9.0	1.8	1	23	883	906	883	906	0.97

Sequence Information

Coding Sequence: ATGTCTTCTGAAGATTCCTCAGATGACGAGCCTCTATCCGTGCTGGCTACACAAAAGAAGGCCGAGTCAGGGATCGAAATACTTCCCGTATATAGTTCAACTGACGGGCTTGCTGAGAAAATAGATGTGAGGAAGAAATGTGATGTTTCTATAACAATTCAATCAGTTTTGCAAGACCCGCCGATGGTGGAAAGACCAGCTGATGTGTGGCTGTATTTGACAGACTTCAACCCTACCGGACCGTATACTTGCTTATTGTGCTCCGAGTGGTTCCTGAACAGGAATAGAATAGTAGTGCATTATGTGATTGATCATAAAAAAGAATATTGTGGAATATGCAGataccttttggAAAACAGAGAAGCTATGAATGAGCACCAAAAATTCCACATGCCATGGAAATGTTCACAATGTGGAGATATCTGTGAAAATCAGACAGAGCTGGCCTTACATTATAGCCAACTTCACAATCTTGTTCACTGCAGGTTCTGCTCCCTGAGATGCCCTGATGGAGAGGAGTATCAGAACCATTTGCTCCAGAAACATGCTGTTACACAACCTGACTGCACCAAGAATGAAAGTCTATGGGATTTTGAAGATGAAAAATCACAGAAGTTCCTTTGTTTATTGTGCTCAAGGAAATTAAATAAAGGCAAGGAGTTCTCACACCACTACATGTCCTATCATCACTTCACATTAAAATGCTTCACAAACATCATATCTGGTGTTGATCTAGGCTTCAATGTGAGAGGCATAGACCTCACACCAGAGTTCATAGAAGCAGAACTAAAATCATACTCTTGTTATGGATATGTGgactttgtaaaaaatatgaaagtcAAAGAAGAACCCGTGGCAGAAGAGACTGTGGTGGTCAATTGTGAACCAGATCTGAGTGAAActtatgatgattatgataatgataacactAAGCCAAATAATGATGTGGTTCCTTACAAAGGAGTACAAGATTTTGATATTGCACTTGTTGAAGTGATAGTATTACAGAAATGCTATTTTCAATATGTTCATggaattttaaaagaaataagtatgaACACAATGCCTGTATCATCAGAAGTTAATTATTCTGAAATTGAAACACTAACAAGACCAGTTAATTGTTGCTTTTGTACTGAAGTAAGCACTAAGAAGAGTGCTTTTGAGACTCATGTTTCTAAGGCACACAGTATGAAGATTGTTCCTGTCTATTGGTGTAGAGTTTGTGCTGCAACTTTTGACAGTTTGACTGAATTGGAGACACATTGCAGTCAGGAATTAGGGGAGTTTGATGACCTGTGGATCTGTCAGTTTTGTGACAAAGAGTTTGATGGCAGAGAAGCGACAAGAAAGCATTTGACAGAACATTGGGATCTGATGGAGTATGACAACTGCTTCAGCCCTCATTTGGGGTTCAAATGCAAGTTCTGTCCCATTCTGTTTTGGAATGAGGATGACAGAGAGTCACATCATGTCAAAGTACACTATGACAAGAACCCTAGTGATTTCTATAGCTGCACACTCTGTGATAAAGTTTTTGGAGAcaagATATTCTTCACCCACCACCAACTAGAGGAGCACGATGTAGAGACCCCGTACCTCCTGAAGTGCTGTGTCTGCTCCATAGTCCTGGACAATGTGGACGAGATGAGAGGCCACTTTGAAATAGACCATCCGAGGGCTCGGAAAACTTACTGCTGCTTGGATGACTGTCAGTATAGACCTTTCCTGTTGAAGAAGTCTTTGCATATGCATTTGAAGACGTTCCACACAGCCAAAGCTCGTGCGACGCGTCCCACCACGTGCCCCACGTGCGGGACCCAGTTCTCCTCGGTGAAGGCTTGCTTGCAGCACGCGGCGGCGGCGCACGGCCCCCCGCGCCTCGCCTGCGCGCACTGCCACATGACGCTACACACTACTGATGAGAGAAGGATCCACTACCTCCTGCGGCACCCGAACAACGCGCTGTTCCAGTGCGAGCAGTGCGACAAGTCGTTCCAGCACAAGTCGTCTCTGTACGTGCACAAGCAGCTGCACAGGGCGCCCAGCCAGGACTACACGTGCGACCTCTGCAGGAAAAGCTTTGTGAAACGCGATTCGTTCCGGGAGCACATGATGATCCACGAGGCGCCCCGCCACGCCTGCTCCTTCTGTCCGATGCGCTTCGTCCAACGTTCCAACATGTTGCGTCACGAACGTAGACATACCGGGGAACGACCGTACAGTTGCCAATATTGTCCAAGAACATTCGCTGATAAAGGGGCTTGTAACTCTCATGAGAGAACGCACCAGAACACATCCTTCGCGTGCGTGTACTGCGGTCAGACATTCGCTCAGAAATCCAAGCTCACATACCATATCAGAAGACATACTGGGGAAAATCTGGAGACGTGTTCGCTGTGCTCGAAGATGTTTACGAGCGCGGGCTCGCTGCGCGACCACATGCGAACACACCAGAAGCAGAACTGCAGGAAGACTGTCAAGTGCCCACTCTgcaAAAAGCTGTACATGGACACGCGCGACATGTTGAAGCACATGCGCGGCGCACACACGGCGGGCCAGTTCCAATGCCCGCTGTGCGGCAAGTGCGTGGGCAGCGGCAGCTCGCTGCGGGAACACGTCATGACGCACAGCGAGAGGAAGGCATACCAGTGCAAGTTTTGCCCGAAAGCCTACCACGGGAGAAAGTCAATCATTTACCACATGGAGAAGTGGCATGGCGCAAAGCCTCCCATAACACCAGACCTCTACCGACATTTGAGTCCTAGAGAATGCAAACTGAAGCTAGCTGATGACCTCATAGACAAAATATTCTACCCAAAGAAAACCAACACCGATCTTATCATAGGCGACTTTGTGACCTTCAATAAAGATCTGGTGATAAAGACAGCAAAGACTGATGAAGATGAGAACGAAGACAATCAAAGCGAAGAAGGCAATGAAGAAAAGGTTACAATAAAAATGGAACCAGAAGACGAAACTGATGAGATTCCTCCGTCTGATTTTGTCAATGTGAAGATAGAGATTGAGGAAGAGAACCAAGATGAAGATGTAGAAATGGATTGA
Protein Sequence: MSSEDSSDDEPLSVLATQKKAESGIEILPVYSSTDGLAEKIDVRKKCDVSITIQSVLQDPPMVERPADVWLYLTDFNPTGPYTCLLCSEWFLNRNRIVVHYVIDHKKEYCGICRYLLENREAMNEHQKFHMPWKCSQCGDICENQTELALHYSQLHNLVHCRFCSLRCPDGEEYQNHLLQKHAVTQPDCTKNESLWDFEDEKSQKFLCLLCSRKLNKGKEFSHHYMSYHHFTLKCFTNIISGVDLGFNVRGIDLTPEFIEAELKSYSCYGYVDFVKNMKVKEEPVAEETVVVNCEPDLSETYDDYDNDNTKPNNDVVPYKGVQDFDIALVEVIVLQKCYFQYVHGILKEISMNTMPVSSEVNYSEIETLTRPVNCCFCTEVSTKKSAFETHVSKAHSMKIVPVYWCRVCAATFDSLTELETHCSQELGEFDDLWICQFCDKEFDGREATRKHLTEHWDLMEYDNCFSPHLGFKCKFCPILFWNEDDRESHHVKVHYDKNPSDFYSCTLCDKVFGDKIFFTHHQLEEHDVETPYLLKCCVCSIVLDNVDEMRGHFEIDHPRARKTYCCLDDCQYRPFLLKKSLHMHLKTFHTAKARATRPTTCPTCGTQFSSVKACLQHAAAAHGPPRLACAHCHMTLHTTDERRIHYLLRHPNNALFQCEQCDKSFQHKSSLYVHKQLHRAPSQDYTCDLCRKSFVKRDSFREHMMIHEAPRHACSFCPMRFVQRSNMLRHERRHTGERPYSCQYCPRTFADKGACNSHERTHQNTSFACVYCGQTFAQKSKLTYHIRRHTGENLETCSLCSKMFTSAGSLRDHMRTHQKQNCRKTVKCPLCKKLYMDTRDMLKHMRGAHTAGQFQCPLCGKCVGSGSSLREHVMTHSERKAYQCKFCPKAYHGRKSIIYHMEKWHGAKPPITPDLYRHLSPRECKLKLADDLIDKIFYPKKTNTDLIIGDFVTFNKDLVIKTAKTDEDENEDNQSEEGNEEKVTIKMEPEDETDEIPPSDFVNVKIEIEEENQDEDVEMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -