Mlit003390.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026807.1:9912656-9922035[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 1.2 10.3 0.8 1 23 267 290 267 290 0.97 2 10 0.00011 0.0082 17.1 0.6 1 23 296 318 296 318 0.96 3 10 0.00013 0.01 16.8 1.9 2 23 358 379 357 379 0.96 4 10 0.00091 0.07 14.2 1.3 3 21 391 409 390 409 0.91 5 10 4.4e-05 0.0034 18.3 0.4 1 23 451 473 451 473 0.98 6 10 0.1 8.1 7.7 0.3 6 21 486 501 482 506 0.90 7 10 1.6e-05 0.0012 19.7 0.5 1 23 514 537 514 537 0.93 8 10 0.0012 0.094 13.8 4.2 1 23 543 566 543 566 0.96 9 10 7.5e-05 0.0058 17.6 2.9 3 23 575 596 573 596 0.90 10 10 8.4 6.5e+02 1.7 3.5 1 23 602 625 602 625 0.93
Sequence Information
- Coding Sequence
- ATGGAGCGCATATGTAGTGAATTGTGCAGTGGATGCCTTAGCAAAGATAGACAAATGAAGATTCTGAGTAAATTGTTTAGTGACAAagaatttagtaaaattatcaCTGAAATCCCGATGGATCCAGAGCTAAAGTTTCTTCTCCACATTTGCTGGGAGTGTGAAGCTCACATATTTAAATACATCAGATTCAAACAACAAATAGCAAACAGTTATAGAATACTTGAAGATTATATCAAAAAgcCCATCTCAGTCACTGATACCCATCCGGAACAAATGACTTCATTCTCAAAATTATCAAAAACTTCTCCGGAGATTGTTGATTCAACAACTAAAAAGAGTAAAAATCCACAATCACCTTACAATCCAAGCATAGAAGTTAAAGTTGAAATAGATTCTTATTCCGACGATGACAGAACACTATTTGATATCATCACCGAAGAAAAATGCAAAGAAAACCAACAAGATATTGatgataataaagaaatatttaaagaaaataagcCTAATCATATTTCACAAAAGATTGACCAAAAAGAAACAGAGTTGTGGcagaaaaaagaagaatataTCCACAAAGAGGAACCAGATTGGAAAGAagatttgaaaaagaaaaataaattgctaAAGAGAGAGATGAGACGGCTGAAGAAGGGAGAAAGAAAGAGAACTTCAAAGAAAGTGAAGGTTAAACAAAAGACTGATGATGTTGAGTTTGAACAgATACATTTGACCGAAGAGGCGATAATCAAAGACAGATCAGATTTGGCTAGTAAAGAGGAATATGCAAACTCTATGTTCAAATGTGAACACTGTATTATGCCGTTTGGTAATGAGGAAGATTTGAAGGAACATGTGCAGAAGAAACATTCTTTGGTAACAAAGCACAAATGCGTCATCTGCACGCGCAGTTTCCCAAACGCGGCGACACTGGAGCGCCACTCCGCGCGTCAcgccgctagatggcgctgctcgGTGTGCGCGCACCTCGCCACCTCCGCGGCGGCAGCACTGGCGCACTACAGGCGCGCGCATGCACAGCCTACCGGACCAAAATCAACGGACCAAATCCCGTGCTTACATTGTCCTAAGACATTCCGCTGGCGGACGTCCCTCAGAAAGCATATGGAGACACATAACATAGAATCTGGTCAAAAACGCAGACCACATTGCGAACCCTGTAACATGACCTTTACAACCACTTCGAATTTGAAGAAACATATGCAGTGCAGTTCTAAACATCAAATACAGCTCAAGCTAAGgaAATTGAAACAAGACCCCCAAGACACGGATCCGTCCCCGCCCGACATAGAAAACATAAAATCTTCCATCAACAGTCAGAAAGAACACTTTCCTTGTCCACAATGTGATAAGAAATTCCAGTGGAAAGGGAACCTTTGGAGACATCTACAGAGTCATGCTGCTAGAGCAAACGGCGCGTTAGCGTGCGTTCCTTGCAACCGCTCCTTCTCGTCTATAGCTACATACAAGCAACACATGGAGATTAGCAGGAAACATGTCACCGAGAATGAATATAAATACATGTGCAGTGAATGCGGCAAACGTTTCTACAACAAGATAAAACTGCGAGACCATATCGACTGGGAGCATCTCAAGAAGTATACTCACGTGTGTAGCACGTGTCAGAAAGTATTCAAAAGCCACACGTCTCTGTATCTGCACCGGCAAGTCGTTCACAGACTCAACAACGCAGACCACCTGTGCGACCATTGCGGGAAATCGTTCCcaAACAAGACAAAACTCCGCAGCCACGTGTCCGCCCTCCATACAAGAGACACTCCATACAAATGCATCACATGCGCGGCTCGATTCAGCTGGCACTCGTGTCTGTCTCGACACGTGCGGCGCGTGCACAGGGGCGGGGGCGCCGCTACTAGTACTAGCTGA
- Protein Sequence
- MERICSELCSGCLSKDRQMKILSKLFSDKEFSKIITEIPMDPELKFLLHICWECEAHIFKYIRFKQQIANSYRILEDYIKKPISVTDTHPEQMTSFSKLSKTSPEIVDSTTKKSKNPQSPYNPSIEVKVEIDSYSDDDRTLFDIITEEKCKENQQDIDDNKEIFKENKPNHISQKIDQKETELWQKKEEYIHKEEPDWKEDLKKKNKLLKREMRRLKKGERKRTSKKVKVKQKTDDVEFEQIHLTEEAIIKDRSDLASKEEYANSMFKCEHCIMPFGNEEDLKEHVQKKHSLVTKHKCVICTRSFPNAATLERHSARHAARWRCSVCAHLATSAAAALAHYRRAHAQPTGPKSTDQIPCLHCPKTFRWRTSLRKHMETHNIESGQKRRPHCEPCNMTFTTTSNLKKHMQCSSKHQIQLKLRKLKQDPQDTDPSPPDIENIKSSINSQKEHFPCPQCDKKFQWKGNLWRHLQSHAARANGALACVPCNRSFSSIATYKQHMEISRKHVTENEYKYMCSECGKRFYNKIKLRDHIDWEHLKKYTHVCSTCQKVFKSHTSLYLHRQVVHRLNNADHLCDHCGKSFPNKTKLRSHVSALHTRDTPYKCITCAARFSWHSCLSRHVRRVHRGGGAATSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -