Mlit003942.1


Basic Information
Transcription Factor Domain
Sequence Information
Similar Transcription Factors

Basic Information

Insect
Macaria liturata
Gene Symbol
-
Assembly
GCA_964023185.1
Location
OZ026807.1:20392669-20395686[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.042 3.2 8.9 1.9 1 23 244 267 244 267 0.95
2 16 0.035 2.7 9.2 1.8 1 23 272 295 272 295 0.91
3 16 0.0002 0.015 16.3 0.9 1 23 325 348 325 348 0.96
4 16 0.00042 0.033 15.2 0.4 2 23 411 433 410 433 0.96
5 16 9e-05 0.0069 17.3 1.7 1 23 439 462 439 462 0.95
6 16 0.0066 0.51 11.5 4.0 2 21 466 485 465 486 0.94
7 16 0.0064 0.49 11.5 0.1 1 20 494 513 494 515 0.94
8 16 0.075 5.8 8.1 2.1 1 23 522 545 522 545 0.95
9 16 0.0015 0.11 13.5 0.2 2 23 558 580 557 580 0.96
10 16 0.043 3.3 8.9 2.0 1 23 585 607 585 607 0.97
11 16 0.0012 0.093 13.8 1.8 1 23 642 664 642 664 0.96
12 16 2.7 2.1e+02 3.3 0.1 2 23 669 690 668 690 0.90
13 16 0.0003 0.024 15.7 1.5 1 23 700 723 700 723 0.97
14 16 0.00096 0.074 14.1 2.1 1 23 729 751 729 751 0.98
15 16 0.007 0.54 11.4 7.2 3 23 759 779 757 779 0.95
16 16 0.017 1.3 10.2 2.3 1 23 785 808 785 808 0.96

Sequence Information

Coding Sequence
ATGGTTTCGACACTAACAGAGTCTAAGAACATCTCTGAAGACCAAGAAGGTTTAGACTGGTTGAGAAACAAACTAGGAACTCTTTGGACAGGAACACAGTATTGTGGCCTTTGTTTGGACACTCAAGAAAGTTTGTATCAGTTGAAAAATGAGGTTGCTATTGGTGATAAAGAGGAGATCAAGTCTTTGTATGATATTGTACAATCTATCATGAATTTGGATGTGGAGCACTTCACAGCAAGTGATAAAATATGCAAAACTTGCACTAAAATGAGCATCCAGTCCTATATATTCATTGAAAGAACCAAAAAACTATCCAAAGTCATAAATAACTGTGTTAGTGATATATTGTCTAAAGTCACAGACATGAATAATGAATTAGGAGAAGCATATCCAGAGAGTAATGTAAATGTGATGATTGTGCCCGATTATGACAAAGAAACTATTGAAAGTGTCAAAGATATAATACACAgcacaaataaacatacatcaTGCAAAATGATTATCAAAGAAACATGTACAAAGAATGATAATCTTCAAAGTACTGGACCGTTGATTGTACCAACTCAGAAAGTTATTAAACATCCCAGATTTCCACAGAAAGTCAAGGAAGTTGTGGCCGTAAAACCTGAGCCCAAAGAATCCAATACACCTACAGTTTCACTTGAAAACGGAAAGATTGTCATAGCACCATTGACTATATCTTCATCAGCTCCAGAATTCATCACATACTCATGTAATTCATGTACAAGTATCTTCACAACTTACAGATCTTTAAAAGAACATGAGAAGTTGACTCACAACACCACAGTGTATCAATGTAGGCAGTGCAGTAAGCAGTACAACTCACAACAATACCTTGATGTCCACTATGTTAACACTCATTCAAAGTCAAGGTGTAGGCACTGCCATGATCTATTTGACACTAAAGACTTAAACAGCCATCTAAAACAAGAACATGCAAAATTGGTCCATATTTGCAAGTTCTGTGATCTTGTATATTATACACCAGAACAACTAGAAACACATATAAAATCCTCCCACTTTGATAATGTCCAAAAGGATGACAATAAAACACAGTGTGTTATGTGTCTACGGAGTTTCATACACAAGGAAATAAAATCACACAAATGCAAGTTTTCTTGTTTGGAATGTCTGTCCATGCCATGTGTGCATTATAGCTACCTGATGTCTTATAGGGAGCAAATACTGAACCACGCTACTAAGATAAGATGTCTCGATTGTGATTTCACAACTAAAAGGAAGGAGCAGTTGATTGCTCATGTGAATAGAGAGCATTTAGACCATCATCCCTTCACATGCAATGATTGTGGAACTCAGTTCTATACCAAACTGAGTCTCAAGACACACATAGAACAATTCCACCAGGACCTCAAATGCCAGTACTGTGACCATGagtttaaaactacaaaacactTCAATCAACACAGGaatatctgtaaaaaaatgaCCAGACAGTTTTCCTGCAACTTATGTGTTGCCTCATTTGATTCAGCTGAAGAGTTACAGAAACATACAGAGAAATGCCAAAGTTACATTATATTCCCCTGTACATTATGCAAGAAAGAGTTCTTGTCTGAAACTTTGTTACAAAATCATCACACCAAAGTACATACTGGTATCCAAGTGAGGAAACGAAGGAAATTTATTGAATGCACTCTGTGTAATATTGTATTCAGTAACAGGAAACAAATGTTGGAGCATGAACAGACTGAGCATGAAAATGAAATGTTTCCGTGCAGAATATGCTCAAAACAATTCCCAACTCTGATGAAAATGTACACACATAAACAGAAGCATTACAATAATAGAATTAACTGTGAAAATTGCAACAAATCTGTCATCTCTACCTTGTACGATCAGCATATATCTGTATGCTCAAAGTTCAAAAACGGTTTACCTCATGTTTGCAAAATATGCAACAAAGGGTTTCACATCAAATCAGCTTTAATCAATCACAAGATCATCCATGCTAAGCCTGTACCGTGTGAGTACTGCTCAAAACTGATAAAACCATCTTCAATGAAAACCCATATTGAAATCAAGCATTCTATCATAACTACAGCCAAAACTGTATACAACTGCCAATATTGCAACTATGTGTCAAAGAAGAAAAATGAGCTAGAAAACCACATTAACAAACTACATCTAAAAATCAAGCCATTTGTATGTGAGATTTGTAGCAAATCATTTTGTGGTAAAGCAAGACTGGACGAGCATTTCAGAACTCATTCCGTTAACCAAACTTGCTTTTGCTTATTCTGTGGGAAGAAATTTGCAAATAAAGTGTGTTTAAAGATGCATACAAGACGTCATACGGGTGAGAAACCATATGAATGCAACATTTGTTTTGAAAAGTTCCGTTCCTCGAGCATTATGAAGACTCATAGATTGAAGAAACATCAAGATAAGACAATACAATGCCCTCTATGTGATTTCATGTACCATCTGGTAGCAGAAATGAGGTTCCATGTGAAGAAAACTCATTGGAAACGACCAGAGCCATTTGATTTCAGACAAATTGTTCCCGAAGAATATCATCACTTGTTCGAAGATAGAAGACTGCAGAAATTAGGCGAGACCTAG
Protein Sequence
MVSTLTESKNISEDQEGLDWLRNKLGTLWTGTQYCGLCLDTQESLYQLKNEVAIGDKEEIKSLYDIVQSIMNLDVEHFTASDKICKTCTKMSIQSYIFIERTKKLSKVINNCVSDILSKVTDMNNELGEAYPESNVNVMIVPDYDKETIESVKDIIHSTNKHTSCKMIIKETCTKNDNLQSTGPLIVPTQKVIKHPRFPQKVKEVVAVKPEPKESNTPTVSLENGKIVIAPLTISSSAPEFITYSCNSCTSIFTTYRSLKEHEKLTHNTTVYQCRQCSKQYNSQQYLDVHYVNTHSKSRCRHCHDLFDTKDLNSHLKQEHAKLVHICKFCDLVYYTPEQLETHIKSSHFDNVQKDDNKTQCVMCLRSFIHKEIKSHKCKFSCLECLSMPCVHYSYLMSYREQILNHATKIRCLDCDFTTKRKEQLIAHVNREHLDHHPFTCNDCGTQFYTKLSLKTHIEQFHQDLKCQYCDHEFKTTKHFNQHRNICKKMTRQFSCNLCVASFDSAEELQKHTEKCQSYIIFPCTLCKKEFLSETLLQNHHTKVHTGIQVRKRRKFIECTLCNIVFSNRKQMLEHEQTEHENEMFPCRICSKQFPTLMKMYTHKQKHYNNRINCENCNKSVISTLYDQHISVCSKFKNGLPHVCKICNKGFHIKSALINHKIIHAKPVPCEYCSKLIKPSSMKTHIEIKHSIITTAKTVYNCQYCNYVSKKKNELENHINKLHLKIKPFVCEICSKSFCGKARLDEHFRTHSVNQTCFCLFCGKKFANKVCLKMHTRRHTGEKPYECNICFEKFRSSSIMKTHRLKKHQDKTIQCPLCDFMYHLVAEMRFHVKKTHWKRPEPFDFRQIVPEEYHHLFEDRRLQKLGET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-