Mlit003612.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026807.1:12893312-12895850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0006 0.046 14.8 2.3 1 23 115 138 115 138 0.95 2 10 0.00014 0.011 16.7 3.8 2 23 146 168 145 168 0.94 3 10 0.25 19 6.5 5.2 2 23 176 198 175 198 0.95 4 10 0.00035 0.027 15.5 5.8 2 23 206 228 205 228 0.96 5 10 0.00028 0.022 15.8 5.5 1 21 235 255 235 258 0.90 6 10 0.0049 0.38 11.9 5.2 1 23 264 287 264 287 0.93 7 10 5.1e-05 0.0039 18.1 0.3 2 23 295 316 294 316 0.97 8 10 0.00084 0.065 14.3 1.3 2 23 324 346 323 346 0.96 9 10 0.00048 0.037 15.1 4.4 2 23 353 375 352 375 0.94 10 10 1.5e-05 0.0011 19.8 2.7 1 23 385 407 385 407 0.97
Sequence Information
- Coding Sequence
- ATGGACCTCCAAATCAAGCAAGAAACGGATTCTCAGCCCGACACCGCCCATGACTACTCACAACCAGACAGTAAACAACTTCCACCACCATCAATACCAATACCTACACTAAACACCTTCCCAACCAACCTCTCTTACCCAACAACCTCTTTACTCGGTCAAGAAGGCTTACAAAGGGAGATAACCTCAACAAAGCCTAACTCATTTCAACCGACCTCCTCGGACGGGATAATGAAGTTTATATCGGTGACGAGTGATCTGCTGACGGATGAGCAGAGGGATATGTATGAGCAGGTGCTGACTACGTGGAAACCATCTATGTATCCCAAGCATATTAAACGATATATCTGCCAGAAATGCAGCAAGGAATTCAAGAACTACCAAAATCTGTATTTGCACACAACCAGAGTCCACTCGACGGAGGAATCCGCCGTCATGTGCAACCTGTGTGACAAGACATTCAAAAACAAACACTATCTATACATGCATAGAATGAACAAGCATTACTCCGAAGACGAGAAATGCTATTGTCAATTTTGTCTACAAGAATTCAGAACGAGGCGAGCCCTACACATGCATGTGAAAAAAGCTCACCCAACAACCTTACCTGAAATAAAATGTCACGAGtgtaataaagaatttaatGTCCCGTACAAACTGAGACATCACATCGAACGGTGTCACCGAGTCGATAGAGAAAAACATAGATGTCACATCTGTCAgaaaacatataaaacaaagttaaatCTGTCTCGGCATCTAGTGTTTCAGCACACGGAGATTGAACGGCATCCCTGTGTGTTCTGCCCGATGACATTCAAATCAAGACATCATATGAAACGACACGTCCTAAACATACATCCTCCGTTAGAATCCAAAGTACAATGCCCGGAATGTCTAAAAGAGTTTAAGAACGATCAATATTTGAAAGAGCATATGCAGATCCATTCGTCCCCCGATACAAAGGTTAAGTGTGATTTGTGCGACAAGTATTTTCATTCTCCGTTGCGTTTGAAGAAGCACATCAAGATAGTTCATCCGTCGAAACCAAAGTTACGGTGTGACAAGTGTAATAAGGAATTTGCTCACGAACATTACTTGAAACGTCACAATAACTCTGTACATGTGGAAATAGATGAGTCTAATTATGAACATGAGTGTCCTCAGTGTGGGAAAAAGTTTAAAATCAAAAAGTATCTATCAAATCATATATTGAGGCACGAACAACAGCATTTGAAGAGAATGTCTTCGTTAGTGAAAACGGTGATCGGGGATGATAAGAAAAAGGTGCCGTTGAAGAGGGGCCGGAAGAAGAGGGAAGAGATTGAGTTTATCAAATGTGAGCCTGTGTCTAGCTCGGAAGACTCAGATTCAGAGGAGGAAACTGACTCGGAATAA
- Protein Sequence
- MDLQIKQETDSQPDTAHDYSQPDSKQLPPPSIPIPTLNTFPTNLSYPTTSLLGQEGLQREITSTKPNSFQPTSSDGIMKFISVTSDLLTDEQRDMYEQVLTTWKPSMYPKHIKRYICQKCSKEFKNYQNLYLHTTRVHSTEESAVMCNLCDKTFKNKHYLYMHRMNKHYSEDEKCYCQFCLQEFRTRRALHMHVKKAHPTTLPEIKCHECNKEFNVPYKLRHHIERCHRVDREKHRCHICQKTYKTKLNLSRHLVFQHTEIERHPCVFCPMTFKSRHHMKRHVLNIHPPLESKVQCPECLKEFKNDQYLKEHMQIHSSPDTKVKCDLCDKYFHSPLRLKKHIKIVHPSKPKLRCDKCNKEFAHEHYLKRHNNSVHVEIDESNYEHECPQCGKKFKIKKYLSNHILRHEQQHLKRMSSLVKTVIGDDKKKVPLKRGRKKREEIEFIKCEPVSSSEDSDSEEETDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -