Mlit007211.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026810.1:6636720-6643349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0022 0.17 13.0 3.5 1 23 292 315 292 315 0.96 2 11 0.0085 0.66 11.1 2.1 2 22 329 349 328 350 0.89 3 11 1.4e-06 0.00011 23.1 0.5 2 23 356 377 355 377 0.97 4 11 9.4e-05 0.0072 17.3 1.0 1 23 381 404 381 404 0.97 5 11 4.1 3.2e+02 2.7 0.2 2 23 408 431 407 431 0.89 6 11 0.012 0.91 10.7 1.9 3 23 610 630 609 630 0.90 7 11 0.15 11 7.2 0.3 2 23 650 672 649 672 0.94 8 11 5.2e-07 4e-05 24.4 3.2 1 23 678 700 678 700 0.98 9 11 1.1e-05 0.00083 20.3 1.6 1 23 705 727 705 727 0.98 10 11 6.8e-05 0.0052 17.7 2.3 2 23 734 756 733 756 0.97 11 11 0.044 3.4 8.9 3.8 3 19 795 811 794 816 0.90
Sequence Information
- Coding Sequence
- atgtttGTGGTGTACGAAGTGCCGAACCTGGATAAAAAGGTTTATCCTATCGTACTACTGCCTAAAGATAAAACATCCTTGGGGTCATCGCCACAGTTTTTTAAATGTACGAATTTGTGGGGCTATGATGAGATTGGCAACAAATGTCATCTTTATTCGGGACCTATGATGGCAGTGGCTGTAGATGAACCGTGTAACGCAAGCCTCGCTGAAGAGCCTCCTCTCGAGGCGGCCTGTCCAGATGAATCTGCCTTTAATTTCTCTCTCGGCAGCAACGACATAGACTTGATGCCCATTGTCTTTGCAGATTCCAGCCCATTGTCGCTTTATAATCAGTCAGTAAATCAGTCGAATGTATGGATTGACTCCAACCGAAGCCCATTTGTGTATAATGGTCATGTTCCCATGAATATTAAATATTCCACCAATGAGACcaataattacattttaataaacagCAATGTAACTCAGGTCTATAATAATGGGCAGTCGGAAAGTACCAGTGAGTTGAgacccaagagaactccgaGTACCAAGCCAGTGTACGATGAACTTGGGGACTATTATGAAGATGAGTCAGACAGTGACCAATATCTGCCTGAGCTGgatagaaagaagaaaaaaaagttttcacTGAAACATAAGACACCCTCAGACAGGAATGATGGGAAAGCTCTCAAGCAGCTGTTGTCGACAGAGTCTACTTGCAAGCAGAGAAAGACCATATTGTTTATGGGGAAGGATAGTAAGACCGGACACACTATACAGAATATATCTTATGATGATCCTATGATTAAGTGTTCAGAGATTGATGTGGACCATGAAGTCACTATCGaagACGCGCCATCGCCGGGCGAACCTAAAAAAAAGAAGTTTCAATGCGACAAATGCAAACAAATCTTCGACCAGATCTCTTCGTTCCATCAACACATGAAGGGCAAGCACTCGAACATTAAGACTAGTAGGGATAAAAAACAGGTGTTACGTTGTGAGAACTGCGGGAGGAACTTCAAAACCTACCCGAAGTACAAGAAACATAGCTTTGGCCACGGGGACCCAGACGTGGAATGCCCCAAATGCCACAAAGTCTACTCTTCGGCCGCTACTCTAAAAGTCCACATGAAGATCCATGACAGAAAGTTCCCGTGCTCATATTGCACCCGTTCCTACGTCACCCCACAAGCTTACAGATTGCACATGAAAAAATCGCACTTGAAATATTTGTGCGAATATGAAACTTGCTCTTATATGGCCAATACTGATACTGAACTGACTGACCATCTCAACAATCATATTTATCAAATGAATACCCAAGTTCAGCAAATACAAAATGAGGCATTTCAAGATGAAGAAATAGAAGATCCAGACTTAGAAGAAGACATTCAAGGTGAAAATGTCAAAGATGAAGAAATACAAAACCAGCAGGTGCAAGTAAAACCCGTTGATGAACAAACCGCTCAAAAAGAGAAAGACTTTGACATAGAGAACCTCATTGAAGATTTGAAGGAGATCGATAGAACACATGACATGAATGAATACATAGACCACATGGAGCTAGAACAGATCAACAAGACCAACGATTCTGACATAGCCGAggaatttattgaaaatttcaGCGATGTGGACTTTGAACAAGATTCTGTGCTAATGAATGATATTAAGAACGAAATGGAAGTGTCAAACTTCTTTAACACGAAGTCGGCAGAAGAGACGGACAGGATTAAAGAAGCAGACTCAGTGATAGCAAAGATCATGGCCAGTAAGATATTCCTGCTGGATTCTAAAAAGGCGATGAAATACGCTAAGAAGTCTAAGAGTAACAAGACCTGCGCGTGCTGCAACAAGTCGTTCGACCGCGTGACTGATCTAAAGCGCCATCTCATCGAGCACATGGTGAAGTCTACTCTCGCCAAGACAGTCAGCAGCGTGCATGGCTTCTTGACCATCACGTGCGAGGTGTGTCAAGACCTTTCCTTTGATTCCGTGGACAAGTACAAGGCTCACCTCCGCAGGCACGCGCACCTCACCACATACAAATGCACACTCTGCGACAAATCCTTCAGCGATTCGAGCAACTTCTCCAAACACAAGAAAATCCACGGCATCTCCTACTACCAATGCGATCTTTGCAACAGAAGATTCAACTCCAAAGTCATGCTGTCCCGACACATGGAGTATCACATCAAGCATAAGCCTTTACAGTGCAACATATGTAACAGATATTTCCACTTCGAATCTATGCTTAATAAGCACATCAGAACGGCTCATAAGCTTACTGCTTCGAGCATCAAGTGCAGGTTTTGTGATACCGTTTTAAAGAGTCTTCGCGACAAATGGGACCACGAATGGGCTGTACATAACATCAGGAAGACAGCCAATGATTGCGGAGATTGCCACGCCAAGTTTCGGAAGTATTCGGAGCTGAAGAGACACTGCAATGAAGTTCATGGTATTGATGTGAAGAGAACCAAGACGAGGGCGAACGTGGATAGTGATGCCAtggataatattatgtatgattTCTAA
- Protein Sequence
- MFVVYEVPNLDKKVYPIVLLPKDKTSLGSSPQFFKCTNLWGYDEIGNKCHLYSGPMMAVAVDEPCNASLAEEPPLEAACPDESAFNFSLGSNDIDLMPIVFADSSPLSLYNQSVNQSNVWIDSNRSPFVYNGHVPMNIKYSTNETNNYILINSNVTQVYNNGQSESTSELRPKRTPSTKPVYDELGDYYEDESDSDQYLPELDRKKKKKFSLKHKTPSDRNDGKALKQLLSTESTCKQRKTILFMGKDSKTGHTIQNISYDDPMIKCSEIDVDHEVTIEDAPSPGEPKKKKFQCDKCKQIFDQISSFHQHMKGKHSNIKTSRDKKQVLRCENCGRNFKTYPKYKKHSFGHGDPDVECPKCHKVYSSAATLKVHMKIHDRKFPCSYCTRSYVTPQAYRLHMKKSHLKYLCEYETCSYMANTDTELTDHLNNHIYQMNTQVQQIQNEAFQDEEIEDPDLEEDIQGENVKDEEIQNQQVQVKPVDEQTAQKEKDFDIENLIEDLKEIDRTHDMNEYIDHMELEQINKTNDSDIAEEFIENFSDVDFEQDSVLMNDIKNEMEVSNFFNTKSAEETDRIKEADSVIAKIMASKIFLLDSKKAMKYAKKSKSNKTCACCNKSFDRVTDLKRHLIEHMVKSTLAKTVSSVHGFLTITCEVCQDLSFDSVDKYKAHLRRHAHLTTYKCTLCDKSFSDSSNFSKHKKIHGISYYQCDLCNRRFNSKVMLSRHMEYHIKHKPLQCNICNRYFHFESMLNKHIRTAHKLTASSIKCRFCDTVLKSLRDKWDHEWAVHNIRKTANDCGDCHAKFRKYSELKRHCNEVHGIDVKRTKTRANVDSDAMDNIMYDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -