Mlit003607.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- ZEB2_1
- Assembly
- GCA_964023185.1
- Location
- OZ026807.1:12821688-12832229[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 0.24 12.5 2.2 1 23 98 120 98 120 0.98 2 12 3.1 2.4e+02 3.0 0.1 3 23 129 150 127 153 0.79 3 12 0.017 1.3 10.2 1.5 1 23 154 176 154 176 0.98 4 12 3.4e-05 0.0026 18.7 2.2 1 23 181 204 181 204 0.96 5 12 2.5 1.9e+02 3.4 0.2 3 23 209 230 208 230 0.92 6 12 0.0052 0.4 11.8 0.1 1 20 293 312 293 314 0.94 7 12 0.03 2.3 9.4 0.5 1 23 324 346 324 346 0.97 8 12 0.00032 0.025 15.6 0.5 2 23 354 376 353 376 0.95 9 12 0.00012 0.0092 17.0 1.2 2 23 385 406 385 406 0.97 10 12 2.9e-05 0.0022 18.9 1.3 1 23 412 434 412 434 0.99 11 12 5.2e-05 0.004 18.1 1.2 1 23 440 462 440 462 0.94 12 12 6.2e-05 0.0048 17.9 1.6 1 19 468 486 468 491 0.95
Sequence Information
- Coding Sequence
- ATGGAAAACTTAATGGCCTGTCGAATATGCCTCGCGACAGACGTGAAACTTTACGAAATGTGTAAATATAGTTTGAAAACTGCTTACGAAAATATAACTGGTGTGAATGCATGTACTCCGATGTACCCCCAGCATGTGTGTATCTACTGTGCCACCTTGCTACACAAGTACATGGAGTTCCAAGCACGCTGTCACACGGCACAGAAACTCTGCAATGAATTAGTGCAACAGAATGATGTGATAAAAGAAGTATTAGATAGGAAGATGTCAGCGAACTATTTGAATTCCTTCTATAAATGTGACAGTTGTTATAAAGGATTCATGACAGAGAATACTTATAAGAATCATATGGTTAGACATGATCCTTCATGTGGTCCGGTGGTGTGCAGTGTATGCGCCACTCGTTGGCCCGACCAGCGAACTCTGCGCGCGCACTCGCTTATCGCACACCAGAGGAGGTACACGTGTAAAATGTGCGGCCTTGCTTCGAAATCTGCTCACAAAGCCAAAGAGCACTACAAGTGGCACGCGGGCGTCACGTTCCCCTGCCCCGACTGCGGCAAGGTGTTCCACAAGAGCACCAGCTACCTGACGCACCGCCGCCTGAGACACGCGACGCGAGCCTGCCCGCTGTGCCGGCTCAGCTTCCTGTCAGACACTGGGCTCAGCATGCACAGGAACAAGGCGCACAGGCACGagTGTCATCTATATAAGAGCACCAGCTACCTGACGCACGGGCGCCTGTCCGCTGTGCCGGCTCAGCTTCCTGTCAGACACTGGGCTCAGCATGCACAGGAACAAGGCGCACAGGCACGagACACTGGGCTCAGCATGCACAGGAACAAGGCGCACAGGCACGagAAAGCAGAGCCATTACATGAATGCGGCGGTTGCGAGGCGTCTTTCCGGAGCACGGAAGCGCTCGCTCGTCACACAGATCTAAACTCTGGATACTGCGATACTAATATGCATGTGTGCACCGATTGCGGTGACCATTACGCCAGTGACGCGCTTCTGAAAGAGCACGCGAAAGTGCATGAGAAAAAGAAGGCGGAGCAAGTGTGTCCAcagTGTTCCCGCACGTTCTCTCACGCGCGCTCTCTGGGCGCGCACGTGTCCCGCGCGCACGCGGGGCGGCCGCGCGCCGAGCGAGTCTGCGAGCTCTGCGGGTACAAGTGTATGAGCGCGTCGTCTCTGGTGCAGCACCAGCGCACGCACACGGGTGAGAAGCCCTACGAATGTAGCGTTTGTACGAAGCGGTTCAGTGTTACACAACGCTTGCAGATCCACATGCGCTCGCACACCGGCGAGCGTCCCTTCCAGTGCGCGCGCTGCCCTAAAGCGTTCAAACATAAAGCGGCGCTCAACAGGCACGACCGGGTCCATACCGGTGTGAAACCCTACGCCTGCGATCAGTGCGGGAAACGCTTCTCTCAGTCCAACTCTCTAAAACAGCACTGCGCTGGCGTACACATGCGGCGAGCGGCGTATTCGCGACATAAAAACAATGAATTTATTACTACAGAATAA
- Protein Sequence
- MENLMACRICLATDVKLYEMCKYSLKTAYENITGVNACTPMYPQHVCIYCATLLHKYMEFQARCHTAQKLCNELVQQNDVIKEVLDRKMSANYLNSFYKCDSCYKGFMTENTYKNHMVRHDPSCGPVVCSVCATRWPDQRTLRAHSLIAHQRRYTCKMCGLASKSAHKAKEHYKWHAGVTFPCPDCGKVFHKSTSYLTHRRLRHATRACPLCRLSFLSDTGLSMHRNKAHRHECHLYKSTSYLTHGRLSAVPAQLPVRHWAQHAQEQGAQARDTGLSMHRNKAHRHEKAEPLHECGGCEASFRSTEALARHTDLNSGYCDTNMHVCTDCGDHYASDALLKEHAKVHEKKKAEQVCPQCSRTFSHARSLGAHVSRAHAGRPRAERVCELCGYKCMSASSLVQHQRTHTGEKPYECSVCTKRFSVTQRLQIHMRSHTGERPFQCARCPKAFKHKAALNRHDRVHTGVKPYACDQCGKRFSQSNSLKQHCAGVHMRRAAYSRHKNNEFITTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -