Mlit014879.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026818.1:10275746-10277881[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00019 0.014 16.3 0.8 1 23 60 82 60 82 0.98 2 19 0.00046 0.035 15.1 3.3 1 23 88 110 88 110 0.98 3 19 0.0005 0.038 15.0 1.1 1 23 116 138 116 138 0.99 4 19 0.00047 0.036 15.1 3.9 1 23 144 166 144 166 0.98 5 19 0.00022 0.017 16.1 3.5 1 23 173 195 173 195 0.99 6 19 2.2 1.7e+02 3.6 0.3 1 23 201 223 201 223 0.90 7 19 0.057 4.4 8.5 0.8 1 21 229 249 229 251 0.90 8 19 0.0085 0.66 11.1 3.9 1 23 257 280 257 280 0.95 9 19 0.00067 0.051 14.6 1.6 1 23 286 308 286 308 0.98 10 19 0.68 52 5.1 2.3 1 23 314 336 314 336 0.97 11 19 0.083 6.4 8.0 0.9 1 23 343 366 343 366 0.97 12 19 0.00077 0.059 14.4 0.2 1 23 372 394 372 394 0.98 13 19 0.083 6.4 8.0 0.6 1 23 400 423 400 423 0.95 14 19 0.00023 0.018 16.0 0.1 2 23 427 448 426 448 0.95 15 19 0.0044 0.34 12.0 1.9 2 23 455 476 454 476 0.91 16 19 9.5 7.3e+02 1.5 2.7 1 23 482 504 482 504 0.82 17 19 0.012 0.95 10.6 2.5 1 23 510 532 510 533 0.95 18 19 0.00062 0.048 14.7 1.5 2 23 539 560 538 560 0.97 19 19 0.037 2.9 9.1 3.9 1 23 602 625 602 625 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAGCTGATACGATGGAGGAAACCAGCTCGCTACTGGTGCCTCGCGTCTCCACTAAAGACTCCACAGACCTCCTTCAGACCTCCACAAAAGAGGAAGGTCCAGTTAAGTCCACGTCGAATAGTAAAGTTAAAAAGACACCTAAGAGGAGGAAGCTTGGGTCGCCAAAAACATTCGTATGCGAAATCTGTGAGTACACATCTACTAAAATAAGTAGTTTTAAACGTCACATTTTAACGCACACCGGAGAAAAACCATTTATGTGCGACCAATGTGATTATAGAACAAAACAACTAGCCCATCTGAAGACTCATCAATTGAGGCACACCGGTGAGAAACCTTTCAAGTGTGAGTTGTGCGAGTACAGGTCTACTAAGTTGAGCAATGTGAGGGCGCACATGACCACACACACGGGGGACAAGCCGTTCATGTGTCACTTGTGTGAGTACAAGACTGCTGTCTCCTCACATCTCAAGGAACACATGCAGACACACGACAAAGGAGCCAAGAGGTACAAGTGCCACCAGTGTGACTACAATGCCATCAAACTGAGCAACCTGAAGCGACACCTGCAGAAACACGGCACAGGCTCACACTTCGTCTGTGAGACATGTGGCTTCAACACACTCTTGTTGGATGACTATGAATATCACATCAAAATGCACCAAGatgaaaatgtttataaatgtgACCAGTGTGACTATGctacaaacaaaatacaacatTTGGAAGTACACAATGTTCTTCACACTGTTGATAAGCCACATAAATGTGATCAATGCAATTATAAAACGGCTTATCCCAACAATCTGAAGAGTCATATAATACACAAGCATAGTAATAAGAAACTGTTTAAATGTGACCTGTGTGATTATAGTGGATCCCAACTTAGAACATTGCAAAGACACAAGTTGAAACATAATagtaaaaaattatacaaatgtgATAAGTGTGATTTCAAAGTTCATCTATTGATAGACATGAGGAACCACACACTGACACACTCAGGGCTCTCCTTGCCTTACAAATGTGACCAGTGTGAGTATGAAACTGATGCCCGAGGCAGCCTGCTGAGGCATTCAAAGAAGAAGCATGCTGCTTCTAACAAGTTCAAGTGTAGAGAATGTGACTTTGTGGCAACACAGTCCAGCGACCTGGCACAGCATGCACTCAAACACAATGTACAAAACTCATACATGTGTGACATGTGCAGCTTCAAAACTGAAGAGGAAACTGATCTAAAACAACACATTCAAGAAAAACATAATATGCTAAAGTGTAATGTATGTGGCTTCACCACTACTGATGCAGATAATTTGAAATACCATGCAGCCGTACATACTGATACTAAATCACTAAAATGCAATGAATGCAGTTATGTAACAACAAGAACCAGCAATATGAAAAGACATAGCTTTTTGCACAGCGGAGGAAAACCATACAAGTGTGAATTCTGTGATTATCGGGCTTTGTGGCAAAGCGAGTTGAAAAAACATGTTGTGAAGCATACAGGTGATAAACCATACTCATGTGATTATTGCAAGTACAAGACTGGCAGGAGGGGCAACTTGAAGCCCCACATAGAGAAGCACCATGGCAACCAACAGCTCCAGTGTAAACAATGTCCATATATGACACCTAAAATGAGTGATTTCAGAAAACATATGCGACAACACAACGATGAACAAAATAATGATCCTCAATCTGAAAATTCCGTACAGAACAATGATGGAGACTCTAATCAGACATATGTATCAAGTGAAAACTCTGAAAAAAGCCAGGATAATATCACTCAAACATATCAGTGTGATATGTGTGAGTTCAAAACAGAACAAGAAACTTATTTAAAGCACCACATACAACATGTTCATTCTACAAACAGTGAACATAAAGCTAATCAAATTGAATTGGGCACAAGTTTGACTGAAAATAATGTGAACACATCTGAAAAGAATATGAATGCTACTGAAAATAAACTAGTTAACAAGCAAGAGTTTTTACATATAGATATAGGATTTAAATGTGATTTGTGTAACTTTGAAACACCAGAAGAGTGTGATTTGAAATGTCATGTACAAACACATTTTTCTTTAGATATCAGTGAAGAGAGTCCAATGGAAATATTACCCTAG
- Protein Sequence
- METADTMEETSSLLVPRVSTKDSTDLLQTSTKEEGPVKSTSNSKVKKTPKRRKLGSPKTFVCEICEYTSTKISSFKRHILTHTGEKPFMCDQCDYRTKQLAHLKTHQLRHTGEKPFKCELCEYRSTKLSNVRAHMTTHTGDKPFMCHLCEYKTAVSSHLKEHMQTHDKGAKRYKCHQCDYNAIKLSNLKRHLQKHGTGSHFVCETCGFNTLLLDDYEYHIKMHQDENVYKCDQCDYATNKIQHLEVHNVLHTVDKPHKCDQCNYKTAYPNNLKSHIIHKHSNKKLFKCDLCDYSGSQLRTLQRHKLKHNSKKLYKCDKCDFKVHLLIDMRNHTLTHSGLSLPYKCDQCEYETDARGSLLRHSKKKHAASNKFKCRECDFVATQSSDLAQHALKHNVQNSYMCDMCSFKTEEETDLKQHIQEKHNMLKCNVCGFTTTDADNLKYHAAVHTDTKSLKCNECSYVTTRTSNMKRHSFLHSGGKPYKCEFCDYRALWQSELKKHVVKHTGDKPYSCDYCKYKTGRRGNLKPHIEKHHGNQQLQCKQCPYMTPKMSDFRKHMRQHNDEQNNDPQSENSVQNNDGDSNQTYVSSENSEKSQDNITQTYQCDMCEFKTEQETYLKHHIQHVHSTNSEHKANQIELGTSLTENNVNTSEKNMNATENKLVNKQEFLHIDIGFKCDLCNFETPEECDLKCHVQTHFSLDISEESPMEILP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -