Mlit006323.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:10780361-10788733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.021 1.6 9.9 1.2 1 23 244 267 244 267 0.95 2 22 0.75 58 5.0 0.1 2 23 293 315 292 315 0.94 3 22 9.8e-05 0.0076 17.2 0.5 1 23 335 357 335 357 0.99 4 22 0.44 34 5.7 1.7 1 13 361 373 361 383 0.74 5 22 0.78 60 4.9 1.6 2 23 388 410 387 410 0.92 6 22 0.21 16 6.7 0.4 2 13 417 428 416 431 0.88 7 22 0.62 48 5.3 2.1 1 23 468 490 468 490 0.95 8 22 1.5 1.2e+02 4.1 0.0 5 23 521 540 519 540 0.92 9 22 0.058 4.4 8.5 0.5 2 23 561 583 560 583 0.93 10 22 0.0023 0.18 12.9 1.5 2 23 589 611 588 611 0.95 11 22 0.056 4.4 8.5 0.5 1 23 616 639 616 639 0.92 12 22 0.27 21 6.4 1.2 2 23 642 664 641 664 0.95 13 22 0.0033 0.26 12.4 1.0 2 22 671 691 670 691 0.94 14 22 0.038 2.9 9.1 0.6 1 23 749 772 749 772 0.89 15 22 0.27 21 6.4 0.1 2 23 800 822 799 822 0.94 16 22 0.029 2.2 9.5 0.4 2 23 845 868 844 868 0.95 17 22 0.00065 0.05 14.6 0.4 3 20 875 892 873 896 0.90 18 22 0.022 1.7 9.8 0.9 1 23 901 924 901 924 0.97 19 22 0.00048 0.037 15.0 0.2 2 23 930 952 930 952 0.94 20 22 0.00041 0.031 15.3 5.8 1 23 956 979 956 979 0.97 21 22 0.0011 0.083 13.9 0.6 2 23 986 1007 985 1007 0.96 22 22 0.014 1.1 10.4 2.3 1 23 1013 1035 1013 1035 0.97
Sequence Information
- Coding Sequence
- ATGAATTTCGACGAGGTGATAGTGAAAGAAAGCCCGGGTATATGCCGGTGCTGTCTCTCTGAAGGATGCTACAAAGATTTAGGCTCCGAATATACATGGATGAATGAAACAGAGGTTTATGCTGATATGCTGCTAGATTGCTTCGATATTGGTATATCCCAACACAACGAGGGTCCCAACGGTCCCAAGAGGCTGATCTGTGAGGTGTGCATCACTCGTCTGCGAGATGCGTGCAACTTCAAGAAACAGGTGGTGGACTCAGAGAAGAGGTTTATTGATATGCTCGCACGGGGAgagtttaaaaataaagTGGTGGTGTACGGCAATCCGGCGCGCATGAAGCAGGAGTCCCAGGAGGGTGAGCCAGACGACATTATAGCAGCCGAGGTGGAGTACTTGGATGACATGGAGTTTGGACCCAGCGatgatgaaataataaaaatcgagAAACCTCTCAAATTCCGTCAGTCTACGTCGAAAGCTTCGACATCAGAGGAACCCACACCTAAAGGCAAGAGAGGGAGGCCTAAGAAGGAAGACGACGGAGATAATAAACCCAAGAAAAGGAAGCTTAGTAAAGGTGACACGCCAAGCAGAAATAAAGCGCCAAGCGAGGCCAAGAGTAAGTCCTCAATATCTGCCAACAAGAAAAACCGACTCATGAAAGAAAACGccacaaaaattctagaaaacaCCACCTGTCTCCCGTTCAAATGGCAACGCAAACAGTACCTCTGCTTCTATTGCCATCTCCCACTAACAACCGTGGAGGAACTGAGACAGCACACTCGATCTGAACACGCGAAGTCTAATAACAGATCAGCTGTCTTTCTCCTACGAAGTGACGACAAAGTCAAAGTGGAAATATCAGATTTGCAATGCAAGTTGTGCGGACAAACGATTTTGAACTTTAACGCTTTGGTTGATCACTTGAAAACTGTTCACGGATTGAAATTCAATGAGGGCGAGATTGGCGTGATACCGTACAGACTGTTTGAGAATTATCAATGCGCTATCTGTGAAGAAACTTTCCCATATTTTGTGAAGTTAAATCAACATATGAATAAACATTACGGCGGTTATATGTGCGAACTATGCGGCAAATCTTTTCTAAGCTACGATCGTTTGAGATGTCATTCTCTAAGCCACGGCTCCAAAATCCACTGCAGCATATGTTTCCAATCATTCGACTCCCTCACACAAAGAAACATTCACAGCACAACAGTTCACGACAAACCCAAACTTATAAAATGTGATTACTGTCCAGAGTCGTTCAAAAACTATGCAACACGTCTAAAAACAAGGATTCACGGTACCGAGTCCATATCGACGCGTAGAAGAAAAAACCTGCAGGTTTTATTCAACCATACCTCAATAATACCTTTTAAATGGAGGGGCAAATATCTTTGTTTCTACTGTAGCAAAGATATGTCAGAATATAAAGAGTTGAGAAAACACACGAAAGAGCATGGAGAATGTTCGATACAAGATCATTCGCTCAAAGCTTTGAAAGGAGGGACGAATATGGAGATCAAAATTGATGTGTCAAATTTGACTTGTATATGTGGCGAAAAAACACCGAGCTTAGACGCCCTAATAGAGCATTTACAGGACAAACATGATCTCGAATACGATAGAAATATAGATATGGCCATAGAAGAGTACAGATTAGTCGATCTAAACTGCTTAGTGTGCAAGGAAAAGTTTACGTACTTCGGCTATTTAGTATCACACGTCAATAACAATCACCCGAAAAACTGTCTAATTTGTGACACTTGCGAACAGAAGTTTAATAAGAAACGCGACCTCTTCTCCCATATAAAGAATTATCACAGAGAAGGCGGGTATGCTTGCGAACTGTGTCCACAGACGTTCAACTCTTTGAATATATTAAGGAAACACAAAATCAACAGGCACATGACTCGGTGTCATATATGTCACTTAAGGCTACCATCGGCCGTGTTAAGGCAGAAACATATAGAGATAGAGCACCCAGATAACGGCTCTTTACAGTGCGATGTTTGCGAAAAGGAATTCCATACGAAACAAGGGCTAAGAATGCACACGAGAAAGTGCAAAGGAGATCTGTTCCAATTAACGTGCAAGAAGGAAGATTGCACGATGGATCTGGATTTGAACTACGAAGATCCGACGAAAAGACCGAGCGTGAAGCAGATACGCGAAAACATTGTCACAGTTCTAAACATGTCTACGGCGATACcttttaacttttataaaaacaagTTCAACTGCTTCTTTTGTTCCAAAGATTTTCCAGATTCGGATTCTATGAGAGAGCACACGGTTTTAGAACATCCTGTGTGCGATATCAAAGAAAAATGCATTAGGAAATGTCGCGAAACGGTAGCGTGCGTCAAAATTGACGTCTCAAATTTGTCTTGTAAAGTTTGCTTCGAAACTATACCAGATCTGGACGACCTTCTCGACCATTTGATCTCAAAACATGACGCCAACTACGATAAATCCATCACGACTTGTTTACAACCTTACAAACTGTTAAAAGACAACATGACCTGCCCCAATTGTCCCGGTGAAGTCTTCCGATTCTTCGGCACGTTACTAAAACATATGAACAAAAAACACACGGATAACAAAATCATTTGCGTCTACTGCGGCGAGACGTTTCGTCGCGATCAGAACTTGCGCGTTCATATTTGGCGTCACCATCGAGACGGTCGATTCAAATGTACCATATGTGGCCTCGACTGTAACATACCTTCCCGTCTATACATGCATATGGCCAAAAGCCACGGCGTCAAAGCGGCGAAGTGTCCGAAATGTCCCGAATCTTTTGCTACCCAATACCTAAGACAAAAGCATTTGATAGAGGCTCACGAATCTGGTCACAAATGTGTTCATTGCGGTAAGCTTTTTACACGAAACTCGTTCATGAGAGACCATATAAGGCGAACCCATTTGAAGGAAAAGAATGTGGAATGCTCGGTTTGCAGTatgaagttttttaataatattctgTTGAGACGACACATGGTGAAACATAGTGGGGAGAAGAATTTCCACTGCGAAATTTGCGGCGAGAAATTCTTTTGGCGGAAAAGTTTGAAGACCCATTTGGCTAGACATAGTTGA
- Protein Sequence
- MNFDEVIVKESPGICRCCLSEGCYKDLGSEYTWMNETEVYADMLLDCFDIGISQHNEGPNGPKRLICEVCITRLRDACNFKKQVVDSEKRFIDMLARGEFKNKVVVYGNPARMKQESQEGEPDDIIAAEVEYLDDMEFGPSDDEIIKIEKPLKFRQSTSKASTSEEPTPKGKRGRPKKEDDGDNKPKKRKLSKGDTPSRNKAPSEAKSKSSISANKKNRLMKENATKILENTTCLPFKWQRKQYLCFYCHLPLTTVEELRQHTRSEHAKSNNRSAVFLLRSDDKVKVEISDLQCKLCGQTILNFNALVDHLKTVHGLKFNEGEIGVIPYRLFENYQCAICEETFPYFVKLNQHMNKHYGGYMCELCGKSFLSYDRLRCHSLSHGSKIHCSICFQSFDSLTQRNIHSTTVHDKPKLIKCDYCPESFKNYATRLKTRIHGTESISTRRRKNLQVLFNHTSIIPFKWRGKYLCFYCSKDMSEYKELRKHTKEHGECSIQDHSLKALKGGTNMEIKIDVSNLTCICGEKTPSLDALIEHLQDKHDLEYDRNIDMAIEEYRLVDLNCLVCKEKFTYFGYLVSHVNNNHPKNCLICDTCEQKFNKKRDLFSHIKNYHREGGYACELCPQTFNSLNILRKHKINRHMTRCHICHLRLPSAVLRQKHIEIEHPDNGSLQCDVCEKEFHTKQGLRMHTRKCKGDLFQLTCKKEDCTMDLDLNYEDPTKRPSVKQIRENIVTVLNMSTAIPFNFYKNKFNCFFCSKDFPDSDSMREHTVLEHPVCDIKEKCIRKCRETVACVKIDVSNLSCKVCFETIPDLDDLLDHLISKHDANYDKSITTCLQPYKLLKDNMTCPNCPGEVFRFFGTLLKHMNKKHTDNKIICVYCGETFRRDQNLRVHIWRHHRDGRFKCTICGLDCNIPSRLYMHMAKSHGVKAAKCPKCPESFATQYLRQKHLIEAHESGHKCVHCGKLFTRNSFMRDHIRRTHLKEKNVECSVCSMKFFNNILLRRHMVKHSGEKNFHCEICGEKFFWRKSLKTHLARHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -