Mlit003525.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026807.1:11760685-11778262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 1.5e+02 3.7 2.9 1 23 9 32 9 32 0.91 2 14 0.00016 0.012 16.5 2.0 1 23 113 135 113 135 0.96 3 14 0.00018 0.014 16.4 1.8 1 20 141 160 141 163 0.94 4 14 7e-07 5.4e-05 24.0 2.3 3 23 170 192 169 192 0.92 5 14 0.062 4.8 8.4 2.5 2 23 573 595 572 595 0.96 6 14 1.7e-07 1.3e-05 25.9 1.8 1 23 601 623 601 623 0.99 7 14 0.07 5.4 8.2 0.1 1 23 627 649 627 649 0.98 8 14 0.001 0.078 14.0 0.0 1 23 654 677 654 677 0.96 9 14 0.53 41 5.5 0.5 2 23 717 739 717 739 0.95 10 14 7.5 5.8e+02 1.9 0.4 1 23 765 788 765 788 0.90 11 14 0.00051 0.039 15.0 1.7 1 23 806 828 806 828 0.96 12 14 8.5e-06 0.00065 20.6 1.3 1 23 834 856 834 856 0.98 13 14 1.5e-07 1.2e-05 26.1 1.7 3 23 863 883 862 883 0.97 14 14 0.0013 0.099 13.7 2.0 1 23 889 912 889 912 0.95
Sequence Information
- Coding Sequence
- ATGAACAGGGCGCACCAACCGGATCATATATGTCCGTGCTGCGCGAAGATGTTCTACACCGCAAATGGCTTGTCCCAGCACAGGGTAAAGAAACACCAGAACGACTCAAATGCAGTAGGACCACCATCAGCGAAATGCGAACAATGCAACATACAGTTTATATCCGACGAGGTACATCAACAACATCAGTCAAATAGTCACAAGAGACTAATACCTCGTATTGTTAAGTGCAAAGCCGTAGAGTCGAGCATAGGCGGTCTAATGTGGCACTTCAAGAGTGAACACCCGAATGAACAAGTTGAAATAAGAGACATGGCGCTGCGAGCACCTCACCAGTACCTGTGTCACGAGTGTGGGAAGGATTTTAAAgatatcACAAACTTCACGGACCACAAGAACATCCACACCGGGGTCCGCCCTTACGCCTGCACTGAATGCCCTAAATCCTTCTACTATAGACGACATCTAAACAACCATTTGCCCCTACATTCGCCACCGACGAAACTCTGCCCGCATTGCGGCAAAGCATTCAGGAGCAATTCTAACTTGTGCAACCATTTGAGAGTGGATGCACATGCTCTCTATTGCACGAAATGTGTGTACTTGCTCCAAAAGTTCTACAATTTTAGAGACACATGCAAAAAAGCTAACACCGTTCTGAAGAAATGGATGAAACTATCTAAATTTTCAAAGACACCCATAAAAGAACTCCATTTAAAGTTACCTTCTTCAATAGATATTAGTAATAACAATAACCATGCAGTATACTCTTACAATGTGAACACAGAAGAGGATGcagataaaataattgaaactgtAACATCTAGTAATGATGATCTAGTTAATTTAAAACCAGGCTTTGTCATATTAGATTCAACATATCCcccatataataaagctgcttTAATTAGAAAAGAAAATAGTGTGAAAGGAAATCAGAAGAGAATAGCAAATCCTAAAAGTGATTTAGGAATAGACAGATTCAGTGAAGACATTAAAGAGGAAAAAGAAGTGAAACAGAAACAAGTGAATGAAGCTAAAACTATTGTTAAAGTTGAATATGAAAGACTAGATTCAGATATTGAAGACTGTAAAGTAGAACCAAATAATGATGACAGTGATACAAGAGATAGCAAAATAATAAAGAGTTGTGGAACAAAATATGGCGATAACAGTGTACAGAAGATTTTAAAACAAGCACTTGAGTCTGATTCAAGTGACGATGAGGTCTTgcagaaaaagaaaagaaaagtaaactcCTCAGTTAAAAAAACAGTCACAAAGACAAAGAAAGTAGTGTCGAGGAAGAGAAAAACAAAAGATTTGGACTCTGATGACTCGGAATGTTCAGAAGATGACACAAAAGAAAAGAAGCCAAGATCAAAGATGCCAAAGTTTAAtttgacgaaaaaaaatatccaaCGAAGACTCGGAAATGGAGATGTCAAAGATAAAGACGGCAATGTCATAGATGCAGATATCATTTTGAACAATTTAGAAATAATGCAcagttatacatataataaaataaaacgatatTGCGCTGGAAATGAACCATTAACAACTGTTGCAATAAACTTCCTAGCTCGAATAGTAAAACGCTACGGCAACAAGTACTCAAGTATATTCATAACTAAACATCTCACCACGGACGAGGAAATATTGGAAGATGTCAAAAGAAGAGAGACCAATGAGAACTATGTGCAGAGTGAAAATAAATGCACGAGGTGTTTCAGATACTTTAGATTTGCCAAAATGCTGACTTATCATATAAAGGAGTATCATGATCCCAACAACCCGTACAAGTGCAAGTACTGCGACATCAGTTTCAGCCGCCCCAAGAGTCTCAGACAGCACCTTCTCACTCACAAAGTGGTGTACCAGTGCAAGCAGTGTCCTCTTGCGACTAACTATACAGCCGCAATGGAGGCACATTTCAACATGCACAAAGGAGTTAGATATCCATGCACCAAGTGTGAAGCGGATTTCAAgagTCCTCCAGCACTTGCGTCACATATGAACGCGATACATAAGACGAGCCATATATGTCCGTGCTGCGCGAGGTTCTTCCACTCGGAGATTGGACTGCACACGCACAAGCTGAAGAAACATGCTGACGACATAAATACAGTAGGCCCGCCCTCAGCAAAATGCGAGGAATGCAACATACAGTTTATATCCGACGATATTTATCAAGACCATCGGAGGCGAAGTCACGGCGTCCCTAAAACTATTACCAGTATCAATATGACGAAGAAAAAGAAGCCAGGGTCGAGCAGGCGGACGCCTAAATATACTTGTCGAGTGTGCCAACACGTAGAGGCGAGCATGGGCGCTCTAATGTGGCACTTCAAGAGCGAGCACCCGAACGAGGAGTTCGACAGACAGAGCATGGCGCTGCGGGAGCCGCATACATACCTGTGCCACGAGTGCGGGAAGGGGTTCAAGGACATAACAACATACACGGACCACAAAAACGTTCACACGGGAGTCCGCCCGTACTCTTGCACTGAATGCCCCAAGTCCTTCCACAGCCGAGCCCTGCTAAGGAACCATATAAGCATACATCTGCCGCCGACGAATATCTGCCCGCACTGCGGCAAGGCGTTCCGGAGCAGCTCTAACTTGAGCAACCATTTAAGACAACACACCGGCAACCGCCGCCATGTTTGCAGAATATGCGGCAAAACGTTCCTACATCAGAACACGTTGACGGAACATGTTCGCGGCGTCCATTTACATATACGACGCACGAAGAAAAACGCGAAGCAACACGCGACTgattattga
- Protein Sequence
- MNRAHQPDHICPCCAKMFYTANGLSQHRVKKHQNDSNAVGPPSAKCEQCNIQFISDEVHQQHQSNSHKRLIPRIVKCKAVESSIGGLMWHFKSEHPNEQVEIRDMALRAPHQYLCHECGKDFKDITNFTDHKNIHTGVRPYACTECPKSFYYRRHLNNHLPLHSPPTKLCPHCGKAFRSNSNLCNHLRVDAHALYCTKCVYLLQKFYNFRDTCKKANTVLKKWMKLSKFSKTPIKELHLKLPSSIDISNNNNHAVYSYNVNTEEDADKIIETVTSSNDDLVNLKPGFVILDSTYPPYNKAALIRKENSVKGNQKRIANPKSDLGIDRFSEDIKEEKEVKQKQVNEAKTIVKVEYERLDSDIEDCKVEPNNDDSDTRDSKIIKSCGTKYGDNSVQKILKQALESDSSDDEVLQKKKRKVNSSVKKTVTKTKKVVSRKRKTKDLDSDDSECSEDDTKEKKPRSKMPKFNLTKKNIQRRLGNGDVKDKDGNVIDADIILNNLEIMHSYTYNKIKRYCAGNEPLTTVAINFLARIVKRYGNKYSSIFITKHLTTDEEILEDVKRRETNENYVQSENKCTRCFRYFRFAKMLTYHIKEYHDPNNPYKCKYCDISFSRPKSLRQHLLTHKVVYQCKQCPLATNYTAAMEAHFNMHKGVRYPCTKCEADFKSPPALASHMNAIHKTSHICPCCARFFHSEIGLHTHKLKKHADDINTVGPPSAKCEECNIQFISDDIYQDHRRRSHGVPKTITSINMTKKKKPGSSRRTPKYTCRVCQHVEASMGALMWHFKSEHPNEEFDRQSMALREPHTYLCHECGKGFKDITTYTDHKNVHTGVRPYSCTECPKSFHSRALLRNHISIHLPPTNICPHCGKAFRSSSNLSNHLRQHTGNRRHVCRICGKTFLHQNTLTEHVRGVHLHIRRTKKNAKQHATDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -