Mlit021722.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- PATZ1_1
- Assembly
- GCA_964023185.1
- Location
- OZ026827.1:7527036-7545248[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 18 6.6 0.2 6 20 12 26 6 28 0.86 2 12 0.86 66 4.8 0.6 1 12 193 204 193 207 0.92 3 12 3.6e-05 0.0028 18.6 1.3 1 23 364 386 364 386 0.98 4 12 0.00047 0.036 15.1 1.2 1 23 406 428 406 428 0.99 5 12 0.61 47 5.3 0.2 1 9 449 457 449 459 0.92 6 12 5.2e-06 0.0004 21.2 0.2 2 23 477 498 476 498 0.96 7 12 0.0011 0.085 13.9 1.6 1 23 514 536 514 536 0.98 8 12 7.4e-07 5.7e-05 23.9 4.0 1 23 542 564 542 564 0.98 9 12 0.0013 0.1 13.7 5.6 1 23 570 592 570 592 0.97 10 12 8.7e-06 0.00067 20.5 0.4 1 23 598 620 598 620 0.98 11 12 0.00054 0.042 14.9 0.3 1 23 624 646 624 646 0.98 12 12 0.00046 0.035 15.1 0.1 1 23 654 677 654 677 0.96
Sequence Information
- Coding Sequence
- ATGGGAGACTTAACATTGATGTGCCCTCTATGTTGCAATCTTACTTTTAATTCCAAGGAATCACTTCTTGAACATATTGCAGCTATTATTTCTAATGTATTTTGCCCAGTATGCCATGAAAAAGTTTTATCATTGGAACTTCTATCGGCACATTTAGCCAACGACAACTGTAGCCCTATAGGTCCTGCAcagaatattgtatttattaatgcAGAAAATGACGACTATGAATCTGAAAATTCCACTGCATTGGAAGATAATACACACCCAGGACTTTCATCGGAAAACATTTCTCAAGCAGGAGTTGAAGATGCCACTGACATTAACAATATTCAGATTGACTTGatgaaatgtttacaaaatcaaGAGCTGAAGCTAGTGAAAGAAGATGGCATCAATCGCTACATAATAGTGTCAGATGAAAATGGGGCTCTGAAGCAGGAAGAGattgttacaaaacaaaacaatgatgGGACTGTATCTTTTACTTCTAAAGATATCAAGAGTGAAGCACATGACATTGTTCTTGAAGTGGAAGAGCAGAAGGAAGATGAAGAAGGGAGCCTCATCCAGGAGTACAGCTGCAGCACTTGTCAGATGTCCTTCACATCTGTGTTTGAACACATCACTAACTATCACACTGACCAGGACGTGGTTGTAGAGGGGAACATAGGGAACATGTCAGAGCTGCCTAATATGGAGATGATGGATACAGAGGAGCCAGCCAAGGAGACTACATCAAGGAGGGTCATCACTGACATGGGAAATATTGTAGAAACACCACTGCTCAGTAAAAACTCCACCGAGAAAATAGAAGCGCCCCCGAGGACAGCGCAAACAAAGTCGTTGAGAGATGCTTCCATTGAAAAGAATGGCCGAAAGAAATATGTACACGTCGAGAATCTGTGTGAGAGTGTTATTAGAGACTTGAAGCCTTCCGATCagAAGCAAGTCCAGTGCCACAAGGTGGTGATAGCGCCTGCCGTGTCCAAGAGCGGCGCCACTGTGAAGATGTACACCTGTACCGTGTGCAAGGTGTTCGGCAGCCAGCTCGGGGACTTCCGAACTAAACCCTGCAAACCTGTGAAGTATCCGTGTAATCAATGTGAACTATCATACGACAACTCGAAATCATTGTGTGCACATATGAAAGTACACAAAACGAGACCTGGTTCTGAAGGCAGCTTACCTTTAGCGAAACCCGATCCAGAAACCTACGAGTGTGAGATATGTGGTACATATTTCCTCACGAATAAGTCGTTGAAGCTACACAAACGAATGCACGACCCTATCAAATCCAAACCAATAGAAGCTCCCAAGAACTGCGCGTCTGGCGAGGACCGCTACCAATGCAACGTGTGCGGCAAGATGATACCGGTCGGATACCGCGCCGTGCACAAGGCGAGCCACGAACACGACAAGATGTTGAACTGCGGCATCTGCAACAAGAAGTTCAGCTCCGCAGAGTACCTGGAGATGCATatgaatgtacataatatggatAAGCCACAACAGACCAGATCCGACAAATCCTTGCCATACAGCTGCGTATACTGTGAGAGGAGGTTCGCGCGGCCTCACGAGAAGGTCAAACATGAACGAATACACACAGGTGAGAAGCCGCACGAGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACGCTGCACATGCGGACACACACCGGCGCGCGCCCCTACGCCTGTCCGCACTGCGACAAGCGGTTCAAAGCACACAGCGTATACAACCACCACCTGCTGACGCACTCGGAAGTGCGCGCGTACAAATGTCCGTTCTGTCCGAAAGCGTTCAAGACGTCAGTCCAGCTGGCGGGACATAAGAACTCGCACACTAAACCCTTCTCTTGCACGCAGTGTAATCGTCCTTTCGCATCTCTATACGCAGTGCGCGTGCACACCGAGACACATAACCGGCTGAACAACCTGAAGTTCAAGTGCGCCCTGTGCGGTGCGAGCTACGCGCGCTCCTTTGCACTCAAGGACCACGTGAAGCAAGTACACAAGCAGGAGCTCCATGCTGTGGACCCGCTGCAAGTGGATCAGGAAGACTGGATAAACAAAAATGGCGTCGAATCTGACAAGGATCTCACAGAAGAGATAACAGACTTGGAAATCCCAGCCGATGAACTAATAGTTCCTAACTAg
- Protein Sequence
- MGDLTLMCPLCCNLTFNSKESLLEHIAAIISNVFCPVCHEKVLSLELLSAHLANDNCSPIGPAQNIVFINAENDDYESENSTALEDNTHPGLSSENISQAGVEDATDINNIQIDLMKCLQNQELKLVKEDGINRYIIVSDENGALKQEEIVTKQNNDGTVSFTSKDIKSEAHDIVLEVEEQKEDEEGSLIQEYSCSTCQMSFTSVFEHITNYHTDQDVVVEGNIGNMSELPNMEMMDTEEPAKETTSRRVITDMGNIVETPLLSKNSTEKIEAPPRTAQTKSLRDASIEKNGRKKYVHVENLCESVIRDLKPSDQKQVQCHKVVIAPAVSKSGATVKMYTCTVCKVFGSQLGDFRTKPCKPVKYPCNQCELSYDNSKSLCAHMKVHKTRPGSEGSLPLAKPDPETYECEICGTYFLTNKSLKLHKRMHDPIKSKPIEAPKNCASGEDRYQCNVCGKMIPVGYRAVHKASHEHDKMLNCGICNKKFSSAEYLEMHMNVHNMDKPQQTRSDKSLPYSCVYCERRFARPHEKVKHERIHTGEKPHECEICGKSFRVSYCLTLHMRTHTGARPYACPHCDKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCTQCNRPFASLYAVRVHTETHNRLNNLKFKCALCGASYARSFALKDHVKQVHKQELHAVDPLQVDQEDWINKNGVESDKDLTEEITDLEIPADELIVPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -