Mlit006562.2
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- zfh1_2
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:13271756-13278899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0057 0.44 11.7 0.8 3 21 174 192 172 193 0.94 2 28 0.068 5.3 8.3 0.7 1 23 226 249 226 249 0.96 3 28 0.00052 0.04 14.9 0.9 2 23 255 276 254 276 0.95 4 28 0.094 7.3 7.8 1.4 2 21 280 299 279 300 0.94 5 28 0.0062 0.48 11.6 0.6 2 23 339 361 338 361 0.95 6 28 0.06 4.6 8.5 0.9 3 23 369 388 368 388 0.95 7 28 0.0029 0.22 12.6 0.6 1 23 393 415 393 415 0.98 8 28 0.0093 0.72 11.0 0.4 1 23 421 444 421 444 0.87 9 28 0.0041 0.32 12.1 0.2 1 20 453 472 453 474 0.93 10 28 0.13 10 7.4 5.3 2 21 569 588 568 589 0.94 11 28 0.057 4.4 8.5 0.5 2 23 594 615 594 615 0.95 12 28 0.22 17 6.7 2.8 1 23 620 642 620 643 0.95 13 28 0.052 4 8.6 1.0 1 23 648 670 648 670 0.95 14 28 0.0086 0.66 11.1 2.4 1 23 705 728 705 728 0.94 15 28 0.013 1 10.5 4.5 1 23 734 756 734 756 0.98 16 28 1.1 88 4.4 2.5 5 23 766 784 764 784 0.96 17 28 0.5 38 5.6 1.0 1 23 790 813 790 813 0.89 18 28 0.0043 0.33 12.1 1.3 3 21 823 841 820 842 0.92 19 28 0.75 58 5.0 5.7 2 20 952 970 951 972 0.86 20 28 0.25 20 6.5 0.0 3 23 979 1000 977 1000 0.94 21 28 0.0084 0.65 11.1 0.9 1 23 1005 1028 1005 1028 0.95 22 28 0.00027 0.021 15.8 1.3 1 23 1033 1055 1033 1055 0.97 23 28 1.6 1.2e+02 4.0 2.4 2 20 1059 1077 1059 1079 0.93 24 28 0.001 0.078 14.0 1.0 1 23 1105 1128 1105 1128 0.94 25 28 0.037 2.8 9.1 1.3 1 23 1134 1156 1134 1156 0.89 26 28 0.11 8.8 7.6 0.1 1 23 1162 1184 1162 1184 0.97 27 28 0.0052 0.4 11.8 0.9 1 23 1190 1213 1190 1213 0.94 28 28 0.0001 0.0078 17.2 0.6 2 23 1220 1242 1220 1242 0.96
Sequence Information
- Coding Sequence
- ATGACTGAAAACGGTGATTCTCTACATAAAGTCAATCGGCAGGTGGACGTCAAAGCTCTAATATCGCATATAATCAGAGGAGATGGGATGGACAAATGCCGAATATGCTTGGGCGACACATCACATGGGCAGGTCCACCTTGGAGACACCGTGATGATGGACGGGGAGAAGCCTGTGACGCTCGCAGAGCTGTTGGAACACATCACAGGAGTCCAGGTCCCGCCCGAAGAAGAACTGCCTCGGGCTCTCTGCCTATCTTGCTTCTCATCAGCTCTCGAGGCAGCTAACTTCAGAACCCTAGTCCGAGAAGCTGACTATCATTGGATGAACATAACCCAGCTTCTAGAACATGTTCCCAgccacaaatataataaaaagagtGACCGGATCTGTGCTTACATCTCTGACAACGATATTTACATCACTGACTCATACACAAGCTTGGACATCACTGAAGATACAGATAATATTGAAAATGATTTCTCCTTTAAGAGAATAAGTAAACAACACAACTGTCTATGTCCAGCTTGTGGCAAAAAGTTCACTTATCCATTACAACTGTATAAACATCTTAAAGATTCCGCAGACTTGGTGCGAGCTTGTCATATTTGTGCTCAAATCATGAGTAGAAATGAGTTGATTAAGCATTTGAAAAAAGAGCATGAGGTAGAAGCGTTTGATTGTCAGAAATGTCCGGCATTGTTTCTCAATAGATCTCAATATAAGCAACATATGATCAAAGCACATGCTCATGGTACTTGTACATGTGGTGACTGTGGTCGTACATTCCGAACAGTACCAGGATTTAATGCTCATCAGTCCTTACACAACTTAAGTTCATGTCCGAACTGTGATAACCAGTTCCGTAACCGTACCTGCTACTTGTACCATATAAGAATATGCTGCAACATCGACGCTTCTAAAGCTGTCAAGTCTAAAGTTACAGTAACACTACCAAAGAAGCAAAATAAGAAGTTGAAGATGGGTGTTCGAGGCAGTGCCAACAAAGAATGTATTTGCGATTATTGTAACAAGAAGTTTGCTGGAAAGAAGTTTGTAGCAGCACATATACAAATAGTACATACAAAGGATACTCATAGACCTTGTGCTTACTGCGGGAAGTTATTCGCAAACGCTCACATGACCACTCACTTAAAGACACATCAAGCTCGAGCTTACAAATGTAACCAATGTGGTATCGTCTTAAAATCTAAGTTAGGATACAGCCAGCATTTACGTCTACACACAGGAGAGAAGCCATACACTTGCGATATATGTGGGGAATCATTTTCTGCTTCGTCAAGGAGATCGGAACACATTTACAACACTCATAAGAAATCTCAGAGGGTTTTGAAACATGTGTGTACGGAGTGTCCGGCTAAGTTTAGACTTCCGTCTCAATTAAAACTGCATGTGACCAAGGTAGCGGAGGAGGCGGACCTGCCGCCTGGCCTCTGCCACCTGTGCGCTGGGGAGGTGGTCGCCGCCGCCACCTTCAAACAGCTGGCCCAGAGCTCACAGAACATCTGGGATGATGCTCTGCAACATCTACTCAACACCACACAAACCCCAGAAACAAATGACACAATAGTCATCTTCTACCCTCAAAAAGAAATGACACGCATAAAACCAACCGAAACAAAACACTGTCTTGACAAACCGAAAAGATCGAAAATCAAATTCAAACGGATCAAATATAAGTGCGTCTGTCCGTATTGCAACAAACAGTTCAGATGCCTCAACAACTTGAATGAGCATTTGAGACACACGCAAAGCAGATACTGTACGGAATGCGGCGTTTCACTTGAGAAGAAAAATCTCGCTAAGCATTTGAGATTGCGACATGGAATGGAAATATTCGACTGTTCGAATTGTCATGAGATGTTTCTTGACGAATTAGAGCTGAAGAATCATTGGAAGATGCATCACGGACCAGATTCATACAACTGTTCCACTTGCGGAGCAGGATTTTATAACCAACGAGGGATAAGGGCGCATCACTATTTACACTCGCTCTTCCACTGCCCCTGCGGCGCTTGCTTCGAAAACACGCACTGCCTCAAATATCACAAAGAAAGCTGTTACAAAGGAGATCCTCTACCGGAATCAGAATTCCACTGCGATCATTGCGGAGTCGTTTACTTTAAAAAGCCATCCCTACGTATCCATATAATACAGAAGCATTTGAAAATACTTCCATACGTGTGTCAGACTTGCAGTCATCGCACGTCCACGCTGGCGCATTTGAGATCCCATGCCAAAACCCACGAGAAAGAACGGCAGATGTTACAATGTCACTGTGGCTCCAATTTCCGGACAACATTAGGATATAAACTCCACATGCGAATACATTCCGGCGATAGACCGTATATTTGTTCCTATTGCGGTGAAGGTTTCCTATCATCATCTCGACGTTTAGACCATTACAAAAGACGGCACCAATCCATCAATGACTTGTGCCATGGATGTGATATGTGCTCAGCCAAGTTCATAAGGCCGTCGCAGCTGAAAAAGCACTATCTAGTGATGGTAGAGGAGGAGTCCTGTCCGCCCGGCGCGTGCGTGTCGTGCGCCAGCGCAGCTCTCTCCGCGCAAGAGTTCCGCTTGTTCGTCAGAAACTCCGACAAACTCTGGTACCTAGCCGTGGAAAACATAAACTCCATCAAATACGACGAACAGGAACACGCCAAGTCACTCTGTGCCTTCATTATGAACCAAGATCTCGCAATCACCACTTCCAAAGACTACACAGGAGGCGAACCCACGGAAATCGTGAACAGAtccaaaacaatacaaaagacgaagagaaataaaagaaaaccgAGAAGACCAAGACCAGGAGGTCCTCAGTGCACTTGTCCAGATTGCAACAAGACATTCTCCTGCCCATTCCTATTGCACGACCACTTCAAAAATAACGGACCAAAAACAGCTTGCATGATCTGTGGACTGGTCTTAGCAAGAGGACAAGAATTAAAAGACCATATCGAGATCGTCCACAAAGAAACGGCATATCTTTGCGCGAAATGTCCGTCTCTGTTTACAAAGCAAGACGAGTATAAGCAGCATATGAAGAAAGGACACAAATCTGGAGTTTATAACTGCTTGGAGTGCGGCAGACACTTTCCGAGAAAATCGACATTCGATGCCCACGCTCAAATGCATGGCGTTCGGACTTGTAGAAAATGTAACCTACAATTTACTAACAGAATCTGCTACAGAGAGCATAGAGCCCAATGCGAACCAGAAGCTATCGTTGATAAAGAAACCGTTGCTAAGAATAGACGCTCCAATATCCGAGATCAAGCAGTGTTCATATGTGATTACTGCAACAAGCATTATAGCTTGCGTTCCGTTCTGCAGAATCATATTCTTTGGATCCATATGAACCATAAACCTCACCAATGCCAATGGTGTGGTAAAAGATTCTTTACTCTAGGTCGTATGACGGAACATTCTGTAGTCCATACGAGGGAAAGAAACTTTGAATGTGACATTTGTGGCGCGAAACTAgtatccaagatggccgccgtgTATCACAGAAGACGCCATACTGGTGAAAAACCGTACAAATGTGACGACTGTGATCTTTCCTTCATATCTTCTTCTAGAAGATTGGAACATGCAAAACGGAAGCATAATAAAGGCAATAAGGCGCAATGTCTTTTATGCCCCAGTTCGTTTGCAAGGAAAAGTGAGCTTAAAAAGCATATGGATAAAGTGCATTTTGGTGTGACGTGCAATCAAGAGGATAAGATCGTTTGGATGGGTGGTACGGAACAGATTGGGTTGCAAAGTGTGTCTACTATAtag
- Protein Sequence
- MTENGDSLHKVNRQVDVKALISHIIRGDGMDKCRICLGDTSHGQVHLGDTVMMDGEKPVTLAELLEHITGVQVPPEEELPRALCLSCFSSALEAANFRTLVREADYHWMNITQLLEHVPSHKYNKKSDRICAYISDNDIYITDSYTSLDITEDTDNIENDFSFKRISKQHNCLCPACGKKFTYPLQLYKHLKDSADLVRACHICAQIMSRNELIKHLKKEHEVEAFDCQKCPALFLNRSQYKQHMIKAHAHGTCTCGDCGRTFRTVPGFNAHQSLHNLSSCPNCDNQFRNRTCYLYHIRICCNIDASKAVKSKVTVTLPKKQNKKLKMGVRGSANKECICDYCNKKFAGKKFVAAHIQIVHTKDTHRPCAYCGKLFANAHMTTHLKTHQARAYKCNQCGIVLKSKLGYSQHLRLHTGEKPYTCDICGESFSASSRRSEHIYNTHKKSQRVLKHVCTECPAKFRLPSQLKLHVTKVAEEADLPPGLCHLCAGEVVAAATFKQLAQSSQNIWDDALQHLLNTTQTPETNDTIVIFYPQKEMTRIKPTETKHCLDKPKRSKIKFKRIKYKCVCPYCNKQFRCLNNLNEHLRHTQSRYCTECGVSLEKKNLAKHLRLRHGMEIFDCSNCHEMFLDELELKNHWKMHHGPDSYNCSTCGAGFYNQRGIRAHHYLHSLFHCPCGACFENTHCLKYHKESCYKGDPLPESEFHCDHCGVVYFKKPSLRIHIIQKHLKILPYVCQTCSHRTSTLAHLRSHAKTHEKERQMLQCHCGSNFRTTLGYKLHMRIHSGDRPYICSYCGEGFLSSSRRLDHYKRRHQSINDLCHGCDMCSAKFIRPSQLKKHYLVMVEEESCPPGACVSCASAALSAQEFRLFVRNSDKLWYLAVENINSIKYDEQEHAKSLCAFIMNQDLAITTSKDYTGGEPTEIVNRSKTIQKTKRNKRKPRRPRPGGPQCTCPDCNKTFSCPFLLHDHFKNNGPKTACMICGLVLARGQELKDHIEIVHKETAYLCAKCPSLFTKQDEYKQHMKKGHKSGVYNCLECGRHFPRKSTFDAHAQMHGVRTCRKCNLQFTNRICYREHRAQCEPEAIVDKETVAKNRRSNIRDQAVFICDYCNKHYSLRSVLQNHILWIHMNHKPHQCQWCGKRFFTLGRMTEHSVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCDDCDLSFISSSRRLEHAKRKHNKGNKAQCLLCPSSFARKSELKKHMDKVHFGVTCNQEDKIVWMGGTEQIGLQSVSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -