Mlit006413.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:11537494-11539927[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.003 0.23 12.5 0.1 2 23 44 65 43 65 0.96 2 19 0.0066 0.51 11.5 3.3 1 23 69 92 69 92 0.91 3 19 0.19 15 6.9 0.3 2 21 97 116 96 117 0.90 4 19 0.036 2.8 9.1 0.6 1 23 124 147 124 147 0.93 5 19 3.8e-05 0.003 18.5 2.4 1 23 154 177 154 177 0.95 6 19 0.021 1.6 9.9 2.5 3 23 184 204 182 204 0.90 7 19 4.4e-05 0.0034 18.3 0.6 1 20 210 229 210 232 0.96 8 19 0.088 6.7 7.9 1.8 3 23 295 316 294 316 0.96 9 19 0.065 5 8.3 0.1 2 23 341 363 340 363 0.95 10 19 0.1 7.7 7.8 0.2 3 23 388 408 387 408 0.98 11 19 0.00067 0.051 14.6 1.4 1 21 412 432 412 433 0.96 12 19 0.15 12 7.2 1.8 1 23 474 497 474 497 0.96 13 19 0.18 14 7.0 0.3 2 23 523 545 522 545 0.95 14 19 0.0038 0.3 12.2 0.4 2 23 569 590 568 590 0.94 15 19 0.0019 0.15 13.1 0.0 1 23 594 617 594 617 0.97 16 19 0.64 49 5.2 0.6 1 23 621 644 621 644 0.96 17 19 1.9 1.5e+02 3.7 0.2 1 23 649 674 649 674 0.90 18 19 0.00015 0.012 16.6 3.0 1 23 683 706 683 706 0.97 19 19 9.9e-05 0.0076 17.2 0.5 1 23 716 739 716 739 0.97
Sequence Information
- Coding Sequence
- ATGCCGGCAGACGACATTGAACACATAGCACAACACCTGAAACAGACTCACGAAGGTAAAGACGTCCAAAATTTGGATCTAACCCATGAAATTGCTCTCCGTCCATACAACCTGTCCAAAGAGAAATGGGTCTGTCTCATTTGCAAAGTAAATCTGCCGAGCTTGGTCAATCTAAACCGGCATATGTCGACCCATTATTCGGAGTACACGTGCGATACCTGCGGCAAATGCTACTTGTCAGCTGACAGTCTGAAGCATCACGTGACTTTTGGACATTCCACAAAAATCTCCTGCAACAAATGTAAACAGATCTTTTCCACAGTAGAAGAGAAGAAGGAACACGTCAAGAATACGATGCAGTGTTGGCCGTTCGCGTGTGTTTATTGTGGCGATAGATTCTCTTCTTGGGAAGCGAAACATAGGCATCAAGTGTCTGATCACCAGGTACAAAAAGTGACTTATCCGTGCCCGGACTGCGACAAAGAGTTCAAGTCTCGGAGACATTTCTACTCGCATTATACTGTGGAACATACGCGGGACTCGTTCTTATGTAACTGCTGCGGGAAGATCTTCTCGAATCTCTCCACGTTTAACGAGCACAAACTCGGCCATTCCGGGGAGAAACAGTTCCAATGCTCAGTTTGTTCCAAGGGTTTCGCAAGGAAGAAGAGTCTGATACAACACATGTGGCTCCATAGTGAAACCAAGAGATTCATCTGTAGCATTTgGGCCATGTTGGAAATACGCGGACGTAATCACAGTGAAAATGGTCCAAAAAAGAAAATAGTCCTTGTATGCCAGTCGCCGCAGCGGCGCAATGCTGAACTAATTCTAATACATTCTACCGCTTATCCGTTCAAAACACGGTTCAGTCAAATATTATGCGCGTTTTGTCACGAGGAATACAATGCTTTGACCGACTTGAGGCATCACATGAAAATAGACCATGTACGATCAGATTTCAAAAACGTGTTCTATAGGAACAATGACAACTTGATCAAGGTCGATATAACCGATATGAAATGTAAGATCTGCTCCCAAGATATCTCCGATGTAGATACTTTGATGGCTCATTTGTCAAGTGAGCATCAAAAGCCGGTAAAATTTAATGCTCGCTTCGGCGTTCTGCCGTACAAACAGAATGTAGACAATCAGTGGCTTTGCGTCTATTGCCAGCGAACGTTGGCAGAATTTGTTGCTTTCAAACGTCATATCGCCACACATTTTATGCAATTCTCATGCGATAAGTGTGGTACTAGTTTCGTATCAGATCACGCCCTTCGTGACCATCATAGGCAGGTCAAGTGCTTTAGAACAGCGTATCACCCTCGCAACGGGAAGATAATGAGATCTCGCGGTAACGCCGAAATTATTCTGCAATGTTCTACCGCCTGTCCCTTCCGAACCTGGAAAAATAACTTTAGTTGCGTATTTTGTCGACACCAATCAAACGATCCAACTACTCTAAGAATACACATGGTGACGCGGCACGCTAATTACGACGTGCAAGCAGCATTCTATAAGAAGTTAGGTAAAGATTTCTTGAGCATAGATATCACAGATCTTCAATGCAAACTTTGCTTTATGCCAGTACcaacttttgacactttaacgtACCACTTAAAGAACGATCATCAACAACCTATCAACTTAGACGCTCAATTCGGCGTACTTCCCTTTAGATTAAACGACGGTTCTATCTGGAAGTGCACGATATGTCCGAACGAGTTCAAAGATTTCATCTCACTGAAGAAGCATACGGCAGATCACTTCCAAAATTATGTTTGCGACGCGTGCGGGGAAGGTTTCATTACTGAGTCGGCTATGATCGCACATACCAAGATACCTcatgaaaataaatacaactGCAGCCGCTGCATCGCCACATTTTCCTCGCTAGACGAGCGCAACCTGCACGTCAAGACTCAACACACCTCCACTCCTTATATGTGCATGTACTGCCCGGACAAACCGCGGTTCGCCAACTGGGAACTGAGAAAGAGACATCTCATGGAAGTACACAACTACAAAACCGGCGCCGACAAATACGAGTGCACCACGTGCCAGAAAACGTTCAAAACGAGATCTGGGAAATTCAACCACATGGCGAGAACGCATCGAATGAAAAAAGATTCGGAACTGAATTATCCATGTCCGAGCTGTCCCAAAGCGTTCACGACAAAGTTGTTCCTCGATAAACATATGGCTAAGAAGCATTTTGATATGTAA
- Protein Sequence
- MPADDIEHIAQHLKQTHEGKDVQNLDLTHEIALRPYNLSKEKWVCLICKVNLPSLVNLNRHMSTHYSEYTCDTCGKCYLSADSLKHHVTFGHSTKISCNKCKQIFSTVEEKKEHVKNTMQCWPFACVYCGDRFSSWEAKHRHQVSDHQVQKVTYPCPDCDKEFKSRRHFYSHYTVEHTRDSFLCNCCGKIFSNLSTFNEHKLGHSGEKQFQCSVCSKGFARKKSLIQHMWLHSETKRFICSIWAMLEIRGRNHSENGPKKKIVLVCQSPQRRNAELILIHSTAYPFKTRFSQILCAFCHEEYNALTDLRHHMKIDHVRSDFKNVFYRNNDNLIKVDITDMKCKICSQDISDVDTLMAHLSSEHQKPVKFNARFGVLPYKQNVDNQWLCVYCQRTLAEFVAFKRHIATHFMQFSCDKCGTSFVSDHALRDHHRQVKCFRTAYHPRNGKIMRSRGNAEIILQCSTACPFRTWKNNFSCVFCRHQSNDPTTLRIHMVTRHANYDVQAAFYKKLGKDFLSIDITDLQCKLCFMPVPTFDTLTYHLKNDHQQPINLDAQFGVLPFRLNDGSIWKCTICPNEFKDFISLKKHTADHFQNYVCDACGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNLHVKTQHTSTPYMCMYCPDKPRFANWELRKRHLMEVHNYKTGADKYECTTCQKTFKTRSGKFNHMARTHRMKKDSELNYPCPSCPKAFTTKLFLDKHMAKKHFDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -