Mlit006614.1
Basic Information
- Insect
- Macaria liturata
- Gene Symbol
- -
- Assembly
- GCA_964023185.1
- Location
- OZ026809.1:13849079-13853590[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 0.83 10.8 0.2 3 23 296 316 295 316 0.94 2 15 9.3 7.2e+02 1.6 0.2 6 23 328 346 328 346 0.93 3 15 0.056 4.3 8.6 0.1 2 23 357 379 356 379 0.93 4 15 4.4e-06 0.00034 21.5 0.2 2 23 402 423 402 423 0.97 5 15 1.4e-05 0.0011 19.9 0.3 1 23 429 452 429 452 0.97 6 15 0.24 19 6.6 0.3 1 23 458 480 458 480 0.94 7 15 0.00081 0.062 14.3 2.4 1 23 486 508 486 508 0.96 8 15 5e-05 0.0038 18.2 4.3 1 23 514 536 514 536 0.97 9 15 0.0025 0.2 12.8 5.0 1 23 673 695 673 695 0.98 10 15 0.00025 0.019 16.0 2.5 2 23 702 724 701 724 0.92 11 15 0.00012 0.0094 16.9 3.5 2 23 731 752 731 752 0.97 12 15 0.65 50 5.2 0.4 1 9 758 766 758 776 0.90 13 15 0.012 0.95 10.6 3.1 1 23 782 804 782 804 0.96 14 15 1.3e-06 0.0001 23.1 0.3 1 23 810 832 810 832 0.96 15 15 3.5e-05 0.0027 18.6 0.5 1 23 837 860 837 860 0.97
Sequence Information
- Coding Sequence
- ATGGATATCAATACAGAACAAGTATTTCTAGTCAACTCTGCGGAGCTAGAGCAAGATAATCTTCACACAGCGGCATCATTGCAACCGAATTTTGCAACGCCTGTGGCTGCAGTGCATCATGAAGCTCCCCAAAGCAGCAGCATGTGTGTACCGCAGCCCCTGGACGCCCCGTCCCGCACGCAGACGTGTCGACTGTGTGCCACCGTCACTGAGCTGGTGGTGCCCATCTTTGAAGGAGAGGGACTACAGAATGGGCTTGCTGATAAGATACATCAGCATCTACCTATACAGGTGTGTGAGACAGATGTGCTGCCGGTGGTGCTGTGCTTCCAGTGCACCAGCACGCTGCTGGCGTGGCACGAGCTGGTGCTGTGCTGCGTGCAGGCCGACACTGCCATGAGGGAGCACCTAAACCAGCCACAGCAGCAGCAGCCAGCTGTAGATACTAGTCAAAGAGAAATTAAAGATGAGAAGTCCCCACACATACCATCTAGGCTCATAAAGTCAGCCCTGACTGAGTACATCCACTCCCTGAACTTGGATGACCAAGTAACTGTGGTCTGTCAGAAATGTAACAACAATCCTATATTCACTCCACGTGGGTTTATGGACCATCTCACATACACACATGACTTCGCAAAATCGATTAAAGCAGACATAGTGGCTTTCTTAAGAAACAATGTCACATTTGAAGAGGCTCTCGCTTCAGGCGGTGAATCAGATGCAGACTCTGACAGCCTAGAACTTGTAGATAAATCAGAAACAATAAGACAAAAGGCTGAAGAAATTTCAGATGAGCCAACAGTACATCTTATAAAAGAGTCTGAATTGAAAAATACAGATGCAGCAACTCCAAGCCAAACAGACTGTCTCCCAACTCTCCTCTGCCCATACTGTGACAGCGCCTTCTCCTCTCCCACGAGGCTCGTCCACCACCTCGGGGCGCACATGGACATCTCAATGGAGGAGGGGGTGCAGTGCTGTGACGTCATATACACCACTCACAGGGAGTACGTCACACATCTACAAGCAAGCCACGTGAGCAGGATGTCGTACGGCACAGACACCATGTGCAAGAGTTGCGGCTACCGAGCAGACACAAGCCAGGAGTTACAGGAACATATTATACAGTGGCACAGTGATAGGACGACAAAGCGAGAAAAACTAAAAGAAAGTGCGCTAAATCAGAAATTCATCCCAGCGGTGTGTCCGGAGTGTGACCAGGTGTTCTCCAACAAATACAACATGCTAATACATTTAAAGATGCACGTCACACAGAAGACGTTCAAATGCGCTCGATGTGATAAGGAATACAGCACTAAAGGCAACCTGGCGCAGCATGTGAGGCTGGCACATGAAGGCAAGCAGCCCCACGTGTGCCGGGCGTGCGGGGAGCGCTTCCCGACGCGGGGCGCGCGCGACGTGCACTCCCGCATACACACGGGAGAGAAACCCTTCCATTGCGAAATATGCGATAAGTATTTTCGCGCCAAAAATACGCTCCTACGTCACCGGGACATTCATCTCGGAATCCGCAAACACGAGTGTCCCACTTGCAACAAGAAGTTCCAGAAGTGGTCTCATCTCTCAGCGCACTTCCGCGTTCATAGGAAGAAGAGGCACTTGGATTGGAACGAATCTTCACACCACACCCTCGACAGCCATGAGGCTTTCGAAGACGGGGCCCCTCCTGCAGCACACTCTGACTCGGATGACTCCGAAGATAAGCCGCTCGCCAACCTCGTCACTGAGGGCCAGAATAACTTCTTAAAATTTTACGAAGCACTAAAGAATTTTCGAGATCATATCGCAAACGAACATGTCCCGGAAaaattggaagaagaatccagCGACGAGGAAGAGTCGCTGAATGAAACTGAACCAGTTAACGGGGAACTGAACATAGACGCATACGATGATCTGTCGGCGCGCAACCAGCGGCGGTCGCGGCTCGATGCGGAGACGAGAGCCGTGGTCACTGCGGCCCGGGAGAAGGGACCCGACGGACGCACCGTGTACCGCTGCCACGAGTGCGGCAAGATGCTGAGCACGCAGCACACGCTGCTGTTCCACCGCCGCATCCACTCGGGCGAGCGGCCCTGCGTGTGCCACGTGTGCGGTGCGCAGTTCCGCACGCCGCATGGTCTGCAGCGCCACCTGGCCGAGACGCACgagcgccgccgccgcgccacCTGCCGCCTCTGCAAGCGCACCTTCGCCAACGCGCAGAACCTGAAACACCACGCGCGCACGCACACCGGCGAGCGCCCCTACGAGTGCGAGCACTGCGGCAAGCGAGCGGGAAGGTACATACACGAGCAGACGCACGCGGGGCGGCGCGCGCACGCCTGCCACCGCTGTGCGAAGGCCTTCAGGTGGAAAGCGCAACTAAAGAGACATCTAGCAAGACATGAAGCCAGGAAAGAGCACGTTTGTTCACAATGTGGCCGCCCCTTCAGTGTGGCGAGTGATCTACAACGACACATGCTGGCACACAACCCAGGCTGCTATAAATGTGCCGTCTGTGAAGCCACCTTCAAACAGAAACGATACTTGAAAGTGCATATACAGAATGCTCATGGCAGTAAAGAAACTAAGAATACTGGTTCATAG
- Protein Sequence
- MDINTEQVFLVNSAELEQDNLHTAASLQPNFATPVAAVHHEAPQSSSMCVPQPLDAPSRTQTCRLCATVTELVVPIFEGEGLQNGLADKIHQHLPIQVCETDVLPVVLCFQCTSTLLAWHELVLCCVQADTAMREHLNQPQQQQPAVDTSQREIKDEKSPHIPSRLIKSALTEYIHSLNLDDQVTVVCQKCNNNPIFTPRGFMDHLTYTHDFAKSIKADIVAFLRNNVTFEEALASGGESDADSDSLELVDKSETIRQKAEEISDEPTVHLIKESELKNTDAATPSQTDCLPTLLCPYCDSAFSSPTRLVHHLGAHMDISMEEGVQCCDVIYTTHREYVTHLQASHVSRMSYGTDTMCKSCGYRADTSQELQEHIIQWHSDRTTKREKLKESALNQKFIPAVCPECDQVFSNKYNMLIHLKMHVTQKTFKCARCDKEYSTKGNLAQHVRLAHEGKQPHVCRACGERFPTRGARDVHSRIHTGEKPFHCEICDKYFRAKNTLLRHRDIHLGIRKHECPTCNKKFQKWSHLSAHFRVHRKKRHLDWNESSHHTLDSHEAFEDGAPPAAHSDSDDSEDKPLANLVTEGQNNFLKFYEALKNFRDHIANEHVPEKLEEESSDEEESLNETEPVNGELNIDAYDDLSARNQRRSRLDAETRAVVTAAREKGPDGRTVYRCHECGKMLSTQHTLLFHRRIHSGERPCVCHVCGAQFRTPHGLQRHLAETHERRRRATCRLCKRTFANAQNLKHHARTHTGERPYECEHCGKRAGRYIHEQTHAGRRAHACHRCAKAFRWKAQLKRHLARHEARKEHVCSQCGRPFSVASDLQRHMLAHNPGCYKCAVCEATFKQKRYLKVHIQNAHGSKETKNTGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -